BAC Information

Click to search

BAC

Clone NameMSMg01-410H10
Chromosome3 (Build37)
Map Location 48,349,534 - 48,349,647
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666202, LOC666208
Downstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410H10.T7 (MSMg01no410_h10.b1)MSMg01-410H10.TJ (MSMg01no410_h10.g1)
ACCAG507706AG507707
length804753
length of high quality
(start - end)
177 (73 - 249)114 (121 - 234)
definitionCHROMAT_FILE: MSMg01no410_h10.b1 PHD_FILE: MSMg01no410_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:13 2005CHROMAT_FILE: MSMg01no410_h10.g1 PHD_FILE: MSMg01no410_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGCACTTAACCATGGGCTTTTTTTTTTTTTTTTGGTTGGGAGA
CTATTAATGAGTGCTTCTATTTCTTTAGGGTGTATGGGATTATTTGGTTC
ATTAATCTGATCTGAATTTGACTTTGGTACCTGGAATCTGTCTAGGAAAT
TGTCCACTTCATCCAGGTGTTCCAGTTTTGTTGAGTACAGCCTTTTGATG
TAGTATCTGATGATATTTAGATTTCCTCATATTCTGTTGCCATGTCCTGC
TTTACCCTTCCGACTTTTGTTATTTTGATCCTGTCCCTGCGTTCTCTAGT
TATCGTGCTTTATGTTTCTGTCTCCCCCGCTGACTCTCTCCCCTCTTCTT
CCCTATTTTCCTCCTTCCTTGCCTGACTTCTATAATCACCCCCCCTGCCC
TTCTCTTTGCCCTGTCTCTTTCCTCGCTTTCCTTTTCACCTCGTCCCCCT
CCTTCTTTTTTTTCCCTTCTCCCTTCCTTCTCTCTTTCCTCTTCCTCCCT
CCTCCTCCCCCCTTCCTCCTCTTTTTCCCTTTTCCCTCCTTCCCCCTTCT
TTCCCTCTCCCCTACTTTCCTTTCCTTCTCTTCTTCTTTTTTTCCTTCAC
CTCCCCCTTTCTCCCCTTCCCTGCTATCTTTTCTTCTTCTTTCCTCCCCC
TTTCTTCTTTTTTCCCTCCGTTTTTCATCCCTCCCTCCCCTCTCCTCTTT
CTTCTTCTTTTTTCTCTCCCCCTTTCTCCCTTTTTTCTTCTCCACTTTCT
CCCC
NCCCGATGAAGTGGGAGCCTGGGGGCGCCTGGTTCCGTACCTGGNTGAAC
TATAGAAGGTTCTTGACCCTGTGGAAGAGTAACATACAACAATCATTCCT
TCCTAAGGACCATAGAGCGCAACAGAAATCAAGAAACAAAACATACACCT
AACAAAGACAGGACCACACATTAGTATGTAGAGTATCTTCTCAAACTAAG
ACACTTACAAGCCAATGGGGTGGGGGTGGGGGAGNNNNNNNNTTTTTTNT
NNNNTNNNNNNNNNNNNNNNTNTTTTTTTTTTTTTTTTNNNNNNNNNNNN
NNNNNNTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTTTTTTTTCCCCCCCCCCCCCCGGGGGAGGGGGGAANNANAANNTNN
NNNNNNNCNNGTCCCCAAAAAAAAAAAAAAAACCCTCTGGGGGGGGGGGC
CCCTTCTTTTCCCCCCTCTCTTTTCCCCCTTTCCCCTTCCCTTTTCCTCC
TCCTTTTCTTCCTTTCCGTCCCCTCTTTCTTCCTTTTTTTTCCTCCTGCT
TTTCCTCTCTTCTCCCCTTTTCCTCTCCTCCTCCTCTTCTTCCTTTATTC
CCTCTCCCCCCTATTTTCACTTCTCCCATCCCACCCGCTTTTTTTTCTTT
CTTCCCTCCTTTTCCCCCCCCTTCCTCTCCCCTCCCTCTCCCATCCCCCC
TTCTTTCCCCAACTTTCCTCCTTTTACCTCTTCTTTTTGTCCCCATCCTT
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_h10.g1 MSMg01no410_h10.g1 CHROMAT_FILE:
MSMg01no410_h10.g1 PHD_FILE: MSMg01no410_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:13 2005
         (114 letters)



>mm_chr3_48349334_48349847
          Length = 514

 Score =  221 bits (114), Expect = 1e-62
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagaaatcaagaaacaaaacatacacctaacaaagacaggaccacacattagtatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aacagaaatcaagaaacaaaacatacacctaacaaagacaggaccacacattagtatgta 255

                                                                 
Query: 61  gagtatcttctcaaactaagacacttacaagccaatggggtgggggtgggggag 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gagtatcttctcaaactaagacacttacaagccaatggggtgggggtgggggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)