BAC Information

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BAC

Clone NameMSMg01-410H13
Chromosome3 (Build37)
Map Location 142,604,920 - 142,764,512
singlet/doubletdoublet
Overlap geneLOC100040053, LOC100039883
Upstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410H13.T7 (MSMg01no410_h13.b1)MSMg01-410H13.TJ (MSMg01no410_h13.g1)
ACCAG507712AG507713
length753754
length of high quality
(start - end)		242 (78 - 319)424 (84 - 507)
definitionCHROMAT_FILE: MSMg01no410_h13.b1 PHD_FILE: MSMg01no410_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:13 2005CHROMAT_FILE: MSMg01no410_h13.g1 PHD_FILE: MSMg01no410_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,604,920 - 142,605,161)(142,764,089 - 142,764,512)
sequence
CTTTTTCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGGAG
CGCGGAATTCAGCAGCTTCCCAAGAAAAGTTCACTGCATTGGTCTCCAGG
GGATTAGAGAGAAAACAATTTCAGCTTCTAAAAGTGCTTCTCAGGGCTTC
CAGTGAAGGCTTGTATGGGACATGAAAGGACTCCAGGAATTAAACAGCTT
TCAGCTTGGTTCTAAATTCAGGAATTAATATAATTAATCAAAGCTGCAGC
TCATTGTTCCTTTGAAAACAATATGCAGAGTACGTGGCCCCTTCACGAAG
TCCACACAATCTTATTAGTTTGATAGTTAGTCATATCCAATTAGCCCGCT
GATTTTTTAAAAAAGGAGTATTCCCATTAATTCTCTGAGAATTCCATGTT
ATGTATTTTGCTCACACTCTCTCACCCTGTAACTCCTCCAAGACCCACAC
CCACTTTTACCCATGTAACTGCATGTTCTTAACAAACAGAAAAACACTGT
AACAGTCTCATATTCTATTTGTACTGCTCAAATACCCTAGGGTATGCCCA
CCTGCCCTCGATTGTTGTGTATCCATCACGCTCCTCCTCCCTATAGGTAA
CCTGTATTTTCTCCTCCCCTTAATCTCCTGTCATTTTTCCCATTGTCCCC
CATTCTTTTCTTCTTTTTTCCTTCCCCCTTTTGTTCGCTTCGCCCCCTTT
CCCTCTTTTTTTCTCCCCCCCATCTTCTTCCTTAATTTACCTCCTCTTTT
TTC

NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTTCTGCTCATTAAA
CTGAATGTGCTCTGCGCTCCTCTCTGCATTGCTTTGAGCAAGCAGCTGAG
AACAAGGGACTAACATCAAAATTATTAAATTGAGGAGATTTTATTTGGTC
TTCACATGCCAGAGCCGCTTTGATGAGGAAGTGTTTTGGCACCGAAAGGA
GCGACGAGCAGCTGGAGGAAAAATCAAATGAAACTAAGCCTTGGAAAATT
GAAGAAAACGCAAGCTTAATAATATTTTATAATTAAATTTCCACAAACAA
TAGCGGCAAATGAAGTAATCTGCAAAGTCTGTGAACTCATTTGCATAATT
GATGCCGGTCCCCTGTAAATGAATAATGAAGATAATAAAAGATGTTGCTA
AAAATGGGCACAATAACAGCAAATTTCATCAAGCCGCGCTCTCTGATTAA
TCTGCTCTCGCAAATCACTTGCGAGAGGGCAGTGCGTGACTATCCTTGCC
TCAGTCCGTTCACCCCCCTTTCCCCCCTCCCCCCTCCTTTCCCCCCTTTC
CTTTCCTTCCTCTCTCCCCCCCTTTCCCTTCTCTTCCTCTCCTTCCCGCC
TTTCCCCTTTTCCTTCTTCTCCATTCCTTCCTTTCCTCCTCTTCTATCTC
GCCCCTCTCCCCCCTTTTTTCACCTCTCTTCCCGTTCTTCCTCCCCCTTC
TCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_h13.b1 MSMg01no410_h13.b1 CHROMAT_FILE:
MSMg01no410_h13.b1 PHD_FILE: MSMg01no410_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:13 2005
         (242 letters)



>mm_chr3_142604720_142605361
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcactgcattggtctccaggggattagagagaaaacaatttcagcttctaaaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcactgcattggtctccaggggattagagagaaaacaatttcagcttctaaaagtgc 260

                                                                       
Query: 61  ttctcagggcttccagtgaaggcttgtatgggacatgaaaggactccaggaattaaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctcagggcttccagtgaaggcttgtatgggacatgaaaggactccaggaattaaacag 320

                                                                       
Query: 121 ctttcagcttggttctaaattcaggaattaatataattaatcaaagctgcagctcattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 321 ctttcagcttggttctaaattcaggaattaatataattaatcaaagctgcagctcacagt 380

                                                                       
Query: 181 tcctttgaaaacaatatgcagagtacgtggccccttcacgaagtccacacaatcttatta 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tcctttgaaaacaatatgcagagtacgtggcctcttcacgaagtccacacaatcttatta 440

             
Query: 241 gt 242
           ||
Sbjct: 441 gt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no410_h13.g1 MSMg01no410_h13.g1 CHROMAT_FILE:
MSMg01no410_h13.g1 PHD_FILE: MSMg01no410_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:13 2005
         (424 letters)



>mm_chr3_142764081_142764904
          Length = 824

 Score =  812 bits (420), Expect = 0.0
 Identities = 423/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttctgctcattaaactgaatgtgctctgcgctcctctctgcattgctttgagcaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aatttctgctcattaaactgaatgtgctctgcgctcctctctgcattgctttgagcaagc 373

                                                                       
Query: 61  agctgagaacaagggactaacatcaaaattattaaattgaggagattttatttggtcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agctgagaacaagggactaacatcaaaattattaaattgaggagattttatttggtcttc 313

                                                                       
Query: 121 acatgccagagccgctttgatgaggaagtgttttggcaccgaaaggagcgacgagcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acatgccagagccgctttgatgaggaagtgttttggcaccgaaaggagcgacgagcagct 253

                                                                       
Query: 181 ggaggaaaaatcaaatgaaactaagccttggaaaattgaagaaaacgcaagcttaataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggaggaaaaatcaaatgaaactaagccttggaaaattgaagaaaacgcaagcttaataat 193

                                                                       
Query: 241 attttataattaaatttccacaaacaatagcggcaaatgaagtaatctgcaaagtctgtg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atttaataattaaatttccacaaacaatagcggcaaatgaagtaatctgcaaagtctgtg 133

                                                                       
Query: 301 aactcatttgcataattgatgccggtcccctgtaaatgaataatgaagataataaaagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 aactcatttgcataattgatgccggtcccctgtaaatgaataatgaagataataaaagat 73

                                                                       
Query: 361 gttgctaaaaatgggcacaataacagcaaatttcatcaagccgcgctctctgattaatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  gttgctaaaaatgggcacaataacagcaaatttcatcaagccgcgctctctgattaatct 13

               
Query: 421 gctc 424
           ||||
Sbjct: 12  gctc 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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