BAC Information

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BAC

Clone NameMSMg01-410H22
Chromosome3 (Build37)
Map Location 40,479,864 - 40,480,021
singlet/doubletsinglet
Overlap geneIntu
Upstream geneLOC100041443, LOC100041458, LOC100040882
Downstream geneSlc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410H22.T7 (MSMg01no410_h22.b1)MSMg01-410H22.TJ (MSMg01no410_h22.g1)
ACCAG507730AG507731
length798756
length of high quality
(start - end)		159 (77 - 235)435 (85 - 519)
definitionCHROMAT_FILE: MSMg01no410_h22.b1 PHD_FILE: MSMg01no410_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:15 2005CHROMAT_FILE: MSMg01no410_h22.g1 PHD_FILE: MSMg01no410_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTGAAGTACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTGTCATGTCAATTTTATTTAGTGATGAAAAAACA
AAAGTCAGAAGTTGGATTGTCCTGCAGTGGTGGAACTGTAGTCAGCACAC
AGCAAGTGGCCTTGGGTCCCTGTCCAGCACTAGGGGAAAGAGAGGAAAGG
AGAGTGGGGTGGAGGGAGGAAAGAGAGAGGCAGGNAANNNNNNNNNGNNN
NGNNNNNNTTTTTTTNTTTNTNNTTGGTTTNGTTTTTTGGTGTTTGTGTT
TTTGTGTTTTTNGGTGGGGGGGGTGTTTTTTTTTTTTGGNGGNNGGGGNG
GNGGNNGGGGGNGGGGGGGGTTGTTTTTGTGTTTTTTTGTTGGTGTGGTT
GTGNGGGNTTTTGGTTTTTTGTTTTTTGGTTTGTTGTTTTGTGTTTTGGN
TGTTTTTTTTGTTTTGGTTTGTGTTTTTTTTGTTGTGTTTTTGGTGTGTT
TNTGGTGTTTGTTTTTTTTGGTTTCTGTTTCGTTTTTTTTTGGTTTTTGT
TGTTGTTTGCGGGTTTCTNTGTTTTTGGTTTCGTTTTTCCTCCTTCTTTC
CCCTTCCCTTTCTTCCTTCCTCTCCTCTCTCTCTTTCCTTCCCCTCTCCC
TTTCTCCCTCTCCTTTCTCTCTCTTCTTCCTCCTTCGCTGCTCTTTTCTT
CTTTTTTCCCTTCTTTCTCTCGTTCTCTCTCGCCTTTTCCTCTTTCTTCT
TCTTCTTTCCCCCCCCTTTCTCCCTTTTTCCTCCTCCCTTTTCCCCCN

NCGAATTTTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTTCTAACATTC
GAGTCCTGGGAATTGTCATCAGGCATGCTCAGGTGTTCTTACCTGGTAAA
CTGTCTCACTACTTAGTACTGCTTAGTTTTGTGTCAACTTGACACAGGCT
GGGGTTATCATAGAGAAAGGAGCTTCAGTTGGGGAAATGCCTCCATGAGA
TCCAACTACAAGATCTCTCAACTAGTGATCAAGGGGGAAAGGCCCCTTGT
GCGCGGGACCATCTCTGGGTTGGTAGTCTTAGTTCTATAAGAGAGCAGGC
TGAGCAAGCCAGGAGAAGCAAGCCAGGGGAAGCAAGCCAGTAAGGAACAT
CCCTCCATGGCCTCTGCCTTAGCTCCTGCTTCCTGACCTGCTTGAGTTCC
AGTCCTTACTTCCTTTGTGATGAACAGCAATATCGAAATGTAAGCTGAAT
AAACCCTTTCCTCCCCAACTTGTTTCTTGGGCATGATGTTTGTGCAGGAA
TAAAGACCCTGACTAAAACAAATTGTACCCGCCAGAGTGAGGAATTCCCG
GGCAACCTGGCCATGTTTTTTGGAAGAATGTGGGAAAAAATTTTTAACTT
TTTGCCAAAAAACCCTTCCCCGCGTAAAAAAACCTCCGGGCACTTTGGCC
GATTTTTTCCAACAAAACATTCCAAATACCCCGGCAATCATGTAAGCCCC
CTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_h22.b1 MSMg01no410_h22.b1 CHROMAT_FILE:
MSMg01no410_h22.b1 PHD_FILE: MSMg01no410_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:15 2005
         (159 letters)



>mm_chr3_40479664_40480222
          Length = 559

 Score =  306 bits (158), Expect = 6e-88
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttatttagtgatgaaaaaacaaaagtcagaagttggattgtcctgcagtggtggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttatttagtgatgaaaaaacaaaagtcagaagttggattgtcctgcagtggtggaac 260

                                                                       
Query: 61  tgtagtcagcacacagcaagtggccttgggtccctgtccagcactaggggaaagagagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagtcagcacacagcaagtggccttgggtccctgtccagcactaggggaaagagagga 320

                                                 
Query: 121 aaggagagtggggtggagggaggaaagagagaggcagg 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggagagtggggtggagggaggaaagagagaggcagg 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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