BAC Information

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BAC

Clone NameMSMg01-410I08
Chromosome3 (Build37)
Map Location 154,363,695 - 154,505,090
singlet/doubletdoublet
Overlap geneBC007180, Tnni3k
Upstream geneSt6galnac3, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz
Downstream geneFpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410I08.T7 (MSMg01no410_i08.b1)MSMg01-410I08.TJ (MSMg01no410_i08.g1)
ACCAG507750AG507751
length769764
length of high quality
(start - end)		249 (80 - 328)246 (83 - 328)
definitionCHROMAT_FILE: MSMg01no410_i08.b1 PHD_FILE: MSMg01no410_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:17 2005CHROMAT_FILE: MSMg01no410_i08.g1 PHD_FILE: MSMg01no410_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,363,695 - 154,363,943)(154,504,845 - 154,505,090)
sequence
AGAGGCCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAG
AGAGCGCGCGGAATTCCAGAGCATGACGCCATATGCAGCATCCTGTGGAT
GGAAAGAAAGCCCAAAGACTGCTCAGGGGGGCTGGTTGGCAGGAGGAAGT
GACACCATCTGAAAAGCTGAAGCCTTGTTTCTGGAAAATCTTGACTTCCC
AAGGCAGGTTGCAGTGTAGGCGCTGAGGCAATGAGAATACTTTTACAGCA
AGGGAGTGAAATAGATGAGCAGAGCTGTTTGAGATGTTGCTGCTGTAGAT
GCAGAGGATGGATTAATGGTCTGGAAAAGTTTTTTTTGTGGGAGGCCAAT
TAGGAATCTGTTGCCAAAGGGTTCATCTAACAGCGCCAGAGAGAGGGAGG
GAGAGGCAGCTGTCTATGGTGACAGTATAGAAGGAGACGGCTGCCGAGAG
AGCATTAGGGACTGAATGACGAGGAGCACAGTAAGGATGGAGCTTAATCA
CATGAATACAAACTCCTCCCTGGTGCTGAACATGTCTGCTACAATGCTGC
CTGGCATTTCTTGCTCCCCACTTGTTCTATATCCGCCCAACGCCTTCCCT
TCCTTTCCGGCATCCCCGACGTACCTCATGGTCCTGTCTGTACAAACTCT
CATTCTCTTTCCCATTCAACTTCTCTTTTTGTTTGTTCTCCATCATTCAC
TTCGCCCCTTTTCCGCTTCTCTCCCCCTTTTTACCCCCTTTTCCTCCCCT
TCTTCCCTCCCTTCCTTTA

AAATNTTCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGATAGCATTTCAGC
TCAGTGAGAGTAGAGCTAAGTTAACCAGGAGAGTCAAATTGGTATGCTTT
ACTGAAGTGAGGTCTCCATATGTAAGGATTAGAACCCTGGAGGTCTCAGG
AGCTGCTGTGGGGAAGAAAACACAAGCTTTAGGCACATACATGCACAGGG
TGGAGAAGAGAGGGAGTCTTGTCACGTGGGTAGGAAAAACAAAATGAGAA
CAATTACAAGTTTGTCCAAAGCTGGCTGTTTTTATTTGGGTCTTGCCTCC
CTCTGTCTGCGGAACATGATGTTGAAGGGACATAAGCCCACATGCTCTTC
CGTATGTGGAGTTAATTGGTTTGGGGACTCACCCACACTGACTTGCTTTG
AAGGCGGCCTTTCCGGCTTCCTTAGAGCTCCGATACGTGTTCCCTCTACT
ATCCCTGTAGACCTCTCCCCTCGTCCCTGATCTGCCTTGGCACCGCCTCC
CTATCATACTTGCCGTTTTTGACTGGATCTCTCCGTTTCCAACATTCCCT
TTCTTTTCCCTTTTCCTCCCTTCCCCCTCCCCTTCGTTGTCCGTTTGTCC
CCGTTCCTTCTACCCTTTCTTTTCCTCTTCCCCCCATATTCCCCCCCTTA
TCCTCCCCTTTTCCCCCCCTTTTCCCCTCTTTTTCTTCTTTCCCTTCCTT
TTTTTCACTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_i08.b1 MSMg01no410_i08.b1 CHROMAT_FILE:
MSMg01no410_i08.b1 PHD_FILE: MSMg01no410_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:17 2005
         (249 letters)



>mm_chr3_154363495_154364143
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatgcagcatcctgtggatggaaagaaagcccaaagactgctcaggggggctggttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatgcagcatcctgtggatggaaagaaagcccaaagactgctcaggggggctggttgg 260

                                                                       
Query: 61  caggaggaagtgacaccatctgaaaagctgaagccttgtttctggaaaatcttgacttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaggaagtgacaccatctgaaaagctgaagccttgtttctggaaaatcttgacttcc 320

                                                                       
Query: 121 caaggcaggttgcagtgtaggcgctgaggcaatgagaatacttttacagcaagggagtga 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 caaggcaggttgcagtgtaggcgctgaggcaatgagaatgcttttacagcaagggagtga 380

                                                                       
Query: 181 aatagatgagcagagctgtttgagatgttgctgctgtagatgcagaggatggattaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagatgagcagagctgtttgagatgttgctgctgtagatgcagaggatggattaatgg 440

                    
Query: 241 tctggaaaa 249
           |||||||||
Sbjct: 441 tctggaaaa 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no410_i08.g1 MSMg01no410_i08.g1 CHROMAT_FILE:
MSMg01no410_i08.g1 PHD_FILE: MSMg01no410_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:17 2005
         (246 letters)



>mm_chr3_154504645_154505290
          Length = 646

 Score =  422 bits (218), Expect = e-122
 Identities = 239/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagatagcatttcagctcagtgagagtagagctaagttaaccaggagagtcaaattgg 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 446 catagatagcatttcagctcagggagagtagagctaagttaaccaggagagtcaaattgg 387

                                                                       
Query: 61  tatgctttactgaagtgaggtctccatatgtaaggattagaaccctggaggtctcaggag 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 386 tatgctttactgaagtgaggtctccatatgtaaggtttagaaccctggaggtctcaggag 327

                                                                       
Query: 121 ctgctgtggggaagaaaacacaagctttaggcacatacatgcacagggtggagaagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgctgtggggaagaaaacacaagctttaggcacatacatgcacagggtggagaagagag 267

                                                                       
Query: 181 ggagtcttgtcacgtgggtaggaaaaacaaaatgagaacaattacaagtttgtccaaagc 240
           ||||||||||||| ||| | ||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 266 ggagtcttgtcacttggatgggaaaaacaaaataagaacaattacaaatttgtccaaagc 207

                 
Query: 241 tggctg 246
           ||||||
Sbjct: 206 tggctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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