BAC Information

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BAC

Clone NameMSMg01-410J12
Chromosome3 (Build37)
Map Location 54,583,300 - 54,583,545
singlet/doubletsinglet
Overlap geneSmad9
Upstream geneUfm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5
Downstream geneRfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410J12.T7 (MSMg01no410_j12.b1)MSMg01-410J12.TJ (MSMg01no410_j12.g1)
ACCAG507806AG507807
length763883
length of high quality
(start - end)
248 (77 - 324)---
definitionCHROMAT_FILE: MSMg01no410_j12.b1 PHD_FILE: MSMg01no410_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:23 2005CHROMAT_FILE: MSMg01no410_j12.g1 PHD_FILE: MSMg01no410_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAGATC
CGCGGAATTCACAGTGATGTCAGACTTGAAGAACGAGGCTTCTCAGACCC
TCAGTATATCAGAGAAGGATGCCAGTCCCTGAGTATCACTCTCTTGGTAA
GTTTCAGGCAGTTTGGAGAAACATAGTTTAGGAGCAATTGACTGTAAAGC
ATAATTAAAAATATGAAGTTTATATTGCCGATGCATCCGGCTCCCAGACA
CATAGTTAAGGATGAAAGGTTTTAATCGTCTTATTATTCACACCATAGAA
CTTGCTTTTTCTGTCTTAGATGTCCNATGATATAGTCTATTTTTCTGTTT
GTTTGTTTGTTTGTTTGTTTCATACAAGTTACTTTGCTCCAATAAATTGA
TTGCATTAGGTAGGATCCCACAGTTAAAAACAAAAATCCAAACCATCTCC
ATTGAAGACAACTATCATTTGTTCCCTGGAACAGCGAGGTGGGCCTTTGT
TATTTTGTTTTACGCATTGCATTTAGTTAAATTCCGCTGGACCCTTTTTT
TTTCAAACGAAAGGTTTTCTTCCCCTTTGAACTATGATCGCATCATTTTC
GTCCTAACTCCCTTAGTATACTTTCCCCACCTTCAATTTTGCCATACTTC
TAACGTTTCTTTTTTTTTATGCCTTCCTTCTTTTTACATTCTTGTGCTGC
CTCCCTCCCCATTCGTTTCTTCTGTATTTCTGCCTCTATCTGTTTTTTCT
CTCCCTTTCTCCG
ATGAAGTGGTAGCCTGGGGGCGCCTGGTTTCGAATTTACGTGACACTATA
AAATTTCTCGCAAAATTTATCTGCAGCTTGTTAAATAGTTGACGGACCAG
GGGAACAGATGGACGATTGGAGTGGGAACAAAAAGATTTTTGCCGATCAC
GGACGAGTCTATGAATAATCTATTTGGACATTGATTTTCCCCTTCAAAGG
AGGACAGGAGGGGGGGCTCTTTTAAGGGCGGTAAAAAACTAAAAAATAAT
TGTCCCTTAGGTTAAAAAAAAAAGTGTGGTTTCAAAAGGGAAACAAAAAA
AAATTTTTCCAATTTTTTTTTTTGGGCCCAAAAAAAAAACAATCTTTTTT
AAAAAATTTTTATAAAACCCCCCCTCTAAAAATTTTTTTGTGGTACACCA
AAAAAAAGGGGGGGTTTTCTCATTTATATGTTTTTTAAAAAAATAGTTTT
AATAAAAAAAAATCCTCCTAAAAAAAAAAAATTTCCCCTCGGGGGCCTCT
TTTTTGTATACTTTTTTTTTGTGGGAAATTTACTCTTCTAAAAAAAAATA
AAAAAAATTCTTTTAAAAAAATTTTTTTTTTTTTACCTTTTCATATAAAA
ATTTTTCTCCTCTCCCCTTTTCTTTTTACATCTCTCCCCTTCTTTTTTTT
CTTCTTTCCCCTTCTTTCCAATTAAAATATTTTTTTTTTTTTCATAAATA
ATTCTCTTTCCCCCAATATAATTATAATATTTTTATTTATCTACCACCCT
CCTTACCTTTACCAATATTTAATTCCATTATTATTTTCCATATTCTTATC
CTTTTCTTTTCTCTTCCTCCCCTTTCTTTTCACCTTACTTTCTTTCCTTT
TTTCTCTTTTCTTTTTTTTCGCGGATTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_j12.b1 MSMg01no410_j12.b1 CHROMAT_FILE:
MSMg01no410_j12.b1 PHD_FILE: MSMg01no410_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:23 2005
         (248 letters)



>mm_chr3_54583100_54583747
          Length = 648

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagaacgaggcttctcagaccctcagtatatcagagaaggatgccagtccctgagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaagaacgaggcttctcagaccctcagtatatcagagaaggatgccagtccctgagtat 260

                                                                       
Query: 61  cactctcttggtaagtttcaggcagtttggagaaacatagtttaggagcaattgactgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactctcttggtaagtttcaggcagtttggagaaacatagtttaggagcaattgactgta 320

                                                                       
Query: 121 aagcataattaaaaatatgaagtttatattgccgatgcatccggctcccagacacatagt 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 321 aagcataattaaaaatatgaagtttatattgctgatgcatccggctcccagacacatagc 380

                                                                       
Query: 181 taaggatgaaaggttttaatcgtcttattattcacaccatagaacttgctttttctgtct 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaggatgaaaggttttaatcatcttattattcacaccatagaacttgctttttctgtct 440

                 
Query: 241 tagatg 246
           ||||||
Sbjct: 441 tagatg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)