Query= MSMg01no410_p21.b1 MSMg01no410_p21.b1 CHROMAT_FILE:
MSMg01no410_p21.b1 PHD_FILE: MSMg01no410_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:54 2005
(286 letters)
>mm_chr3_108859855_108860540
Length = 686
Score = 480 bits (248), Expect = e-140
Identities = 274/284 (96%), Gaps = 3/284 (1%)
Strand = Plus / Minus
Query: 3 gaggaagttccactcagatgttccagtgcatagtgaagagtaatgggccatgtggcaagc 62
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 417 gaggaagttccactcagatgttccagtgcatagcgaagagtaacgggccatgtggcaagt 358
Query: 63 gtggactagtgtagatgaggttaactaagttataccagctagtcaggaagtagcctaagc 122
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 357 gtggactagtgtagatgaggttaattaagttataccagctagtcaggaagtagcctaaga 298
Query: 123 taaagcctgagccataataaataataataagtctctgtgtctttgttgggagctggcaga 182
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 297 taaagcctgagccataataaataataataagtctctatgtctttgttgggagctggcaga 238
Query: 183 ttaagatagacaataatagacaaatgatagcagatgatagatagatagatagatagatag 242
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttaagacagacaataatagacaaatgatagcagatgatagatagatagatagatagatag 178
Query: 243 atagatagatagatagatagatagatag---atagatagataga 283
|||||||||||||||||||||||||||| |||||||||||||
Sbjct: 177 atagatagatagatagatagatagatagttaatagatagataga 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no410_p21.g1 MSMg01no410_p21.g1 CHROMAT_FILE:
MSMg01no410_p21.g1 PHD_FILE: MSMg01no410_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:54 2005
(261 letters)
>mm_chr3_108682523_108683183
Length = 661
Score = 474 bits (245), Expect = e-138
Identities = 257/261 (98%)
Strand = Plus / Plus
Query: 1 cctaaaaccaatgaaaatattactcaaaaagaaacccggtggttctcttgttccctgctc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 cctaaaaccaatgaaaatattactcaaaaagaaacctggtggttctcttgttccctgctc 260
Query: 61 tgatgtagaagccccttcctatgcacactctgcccacaaccgttctagcaaagctctttg 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgtagaagtcccttcctatgcacactctgcccacaaccgttctagcaaagctctttg 320
Query: 121 tcacacataattgtagtggctgagttaggcaactttgggcagcgtccattctttgggtac 180
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tcacacataactgtagtggctgagttaggcagctttgggcagcgtccattctttgggtac 380
Query: 181 agggattgccttgtctcatttttaactctcagcagctaaacgtttgtaggaagatgtggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggattgccttgtctcatttttaactctcagcagctaaacgtttgtaggaagatgtggt 440
Query: 241 aggggaaagagaagggaagtg 261
|||||||||||||||||||||
Sbjct: 441 aggggaaagagaagggaagtg 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space: 164304
Effective search space used: 164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
