BAC Information

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BAC

Clone NameMSMg01-411C11
Chromosome3 (Build37)
Map Location 57,308,575 - 57,484,286
singlet/doubletdoublet
Overlap geneWwtr1, Commd2, Gm410
Upstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4
Downstream geneEG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411C11.T7 (MSMg01no411_c11.b1)MSMg01-411C11.TJ (MSMg01no411_c11.g1)
ACCAG508233AG508234
length738773
length of high quality
(start - end)
246 (70 - 315)239 (57 - 295)
definitionCHROMAT_FILE: MSMg01no411_c11.b1 PHD_FILE: MSMg01no411_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:06 2005CHROMAT_FILE: MSMg01no411_c11.g1 PHD_FILE: MSMg01no411_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,308,575 - 57,308,820)(57,484,048 - 57,484,286)
sequence
GGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAAACAGGATC
CGCGGAATTCAANATACTAATAAAAACTACCCACAAAAAATTGGCTATGA
ACGGAGACAATGCCTTTGTAAACCATATCTTGTCACACTGTCAAAGGGTT
GGATACCTGTCCCTGGCTTATGTGATTTCTTTCCCATCTAAATGCAAAAG
CTCAAGGAAAACTATATTGGTCACAAGGCTAACCACAGTGTTCAAGACTT
AATTTGAAAACTAACTTCTCCTATCATTAAGTGATTTAGAGACTTCAGCA
TTGGCTCCCCTCACCCTGCTCCTAGCCCCAAAAGATGCTATTCCCTGTCT
CATCCCTGGCTGCCTCTATTAATATGACTGAGTCACTTCCCTTCTCCTGT
TTCTCAGTGTGACCACGCTGTGTGCCAAGCCGGAGAGTTTAACTAGATCA
ATCCCACTTCCTTTCTACTCCCACCTCCTTCCTGGCTTTATTCTCCTGCT
GGGTCTACTTTAAGAAAAGGTCTTCTATTTAAAAAGTATAATCTCTTGTG
GAAATTAACACCAACACATCTATATACTGTTATATCCTAAGTCTCCTTAT
GTTCTATATACTCTATAAATACCTGCTATTTCCCAATGCAAAGTGTTTGT
TTTAACTAATTGCGTACGATGACACATGCTATCAATGCGTTCATTATTGT
CCGGTTCGCTCGATTTTGTTTTGCTGCGAATTCCCATG
CCTGGCGGCCCGCCTTCATACCAAGTTAGGNGAACTATAGATGTCTACAA
GGAATTCAGACCCACATCCATTTGTGTTGTCTGTTTTTAATAAAATATTT
TCCACCTCATTGCTAATGTACACATACTATTTTTAGTGTGTTTGCATCTA
CTTTTTGAAGACAAAAAGGAAATATGATCTTGAAATAGAATACATTTGTT
TGGACTGAAGAGTTGAACCTTTGAGTTTGTTTGTGGTTTTTGTTTCCAAA
GGGAAAAATCTAATCTTTTTGTTGGTGTTTTGTTGTTAGTGATTGCCTGC
CTTTGGGCGCGGGGACAGAGGGAGTGGAGGAATACCCCGCTTTCCGCCAT
TGTTCTCGCCTAGGAACGTCATTTGCCTTTTTCGCGCCCCCTGTGGGTGT
CTGTCCTGCGTTACCCCATGTTACCTCATCCTTTCGCCAGCTTCAACTAC
TCTTTTCCTTAACATCTTCACCCTCTCTCTTCTTTTTTTCCTCCCCCACT
TCCCTTGATCCCTTCTTTATCACTTCTTTCCTCTATTGCTCCCCTTCCCC
TTTATCCATTTCTCCCTTTCTCCCCCCCTTTTCCCCTATCTTTTCCCCCT
TCCTTCTCCTCTTTTTCCCTTCTCTTTTCCCTCCTTTCCCATCCCCATTA
CCTTTCTCTTTCTCCTTTCCTTTCACACCCTATTCCCCTCTCCTTCACCC
CACCCCCTTCCCCCATACTTCTTGTAACTTCCTCCCCCCCCTTCCATCCT
CTATTCTCTTCTCCCCGTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_c11.b1 MSMg01no411_c11.b1 CHROMAT_FILE:
MSMg01no411_c11.b1 PHD_FILE: MSMg01no411_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:06 2005
         (246 letters)



>mm_chr3_57308375_57309020
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaaactacccacaaaaaattggctatgaacggagacaatgcctttgtaaaccatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaaactacccacaaaaaattggctatgaacggagacaatgcctttgtaaaccatatc 260

                                                                       
Query: 61  ttgtcacactgtcaaagggttggatacctgtccctggcttatgtgatttctttcccatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcacactgtcaaagggttggatacctgtccctggcttatgtgatttctttcccatct 320

                                                                       
Query: 121 aaatgcaaaagctcaaggaaaactatattggtcacaaggctaaccacagtgttcaagact 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aaatgcaaaagctcaaggaaaactatattggtcacaaggctaaccacagtgttcaagatt 380

                                                                       
Query: 181 taatttgaaaactaacttctcctatcattaagtgatttagagacttcagcattggctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatttgaaaactaacttctcctatcattaagtgatttagagacttcagcattggctccc 440

                 
Query: 241 ctcacc 246
           ||||||
Sbjct: 441 ctcacc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no411_c11.g1 MSMg01no411_c11.g1 CHROMAT_FILE:
MSMg01no411_c11.g1 PHD_FILE: MSMg01no411_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:06 2005
         (239 letters)



>mm_chr3_57483848_57484486
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacccacatccatttgtgttgtctgtttttaataaaatattttccacctcattgctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagacccacatccatttgtgttgtctgtttttaataaaatattttccacctcattgctaa 380

                                                                       
Query: 61  tgtacacatactatttttagtgtgtttgcatctactttttgaagacaaaaaggaaatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtacacatactatttttagtgtgtttgcatctactttttgaagacaaaaaggaaatatg 320

                                                                       
Query: 121 atcttgaaatagaatacatttgtttggactgaagagttgaacctttgagtttgtttgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atcttgaaatagaatacatttgtttggactgaagagttgaacctttgagtttgtttgtgg 260

                                                                      
Query: 181 tttttgtttccaaagggaaaaatctaatctttttgttggtgttttgttgttagtgattg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttttgtttccaaagggaaaaatctaatctttttgttggtgttttgttgttagtgattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)