Query= MSMg01no411_p12.b1 MSMg01no411_p12.b1 CHROMAT_FILE:
MSMg01no411_p12.b1 PHD_FILE: MSMg01no411_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:11 2005
(547 letters)
>mm_chr3_147264277_147265223
Length = 947
Score = 980 bits (507), Expect = 0.0
Identities = 537/547 (98%)
Strand = Plus / Plus
Query: 1 gaaagcttagtataaacagcataaattctattcctaccatttttatagtataagttttaa 60
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 gaaagcttagtataaacaacataaattctattcctaccatttttatagtttaagttttaa 260
Query: 61 ttctattagcatcaactttacaaacacttcaaaagaaggataccccatgaagaaagtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctattagcatcaactttacaaacacttcaaaagaaggataccccatgaagaaagtgca 320
Query: 121 aatctaattgtaaagtgataaattccttcatagtgatataaagaaatttgtattatgtaa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 aatctaattgtaaagtgataaattccttcatagtgatataaataaatttgtattatgtaa 380
Query: 181 aaattcacataccaacacgtgtgagcaacatcagtgtggaagcatatggtattgcaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aaattcacataccaacacgtgtgagcaacatcagtgtggaagcatatggtactgcaatgc 440
Query: 241 aaggtgacttaacaatctccttccacagagaaacatcagaagtcttcctaatattgtatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtgacttaacaatctccttccacagagaaacatcagaagtcttcctaatattgtatg 500
Query: 301 catttggtcaataacattttatcatatgtgtgtgtgtatgtgtgcacatgtataggtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catttggtcaataacattttatcatatgtgtgtgtgtatgtgtgcacatgtataggtttt 560
Query: 361 tcttcagccaaattgaagggtgaaattatattgtttgttggaaaacagagccaattggaa 420
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 561 tcttcagccaaattgaaggatgaaactatattgcttgttggaaaacagagccaattggaa 620
Query: 421 agcatcacattcaacatattaacccaactatacaagggcaaatatcattgactttttctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcatcacattcaacatattaacccaactatacaagggcaaatatcattgactttttctt 680
Query: 481 atttatgggacttagaattttccttttgaaaataagtctatatacgtaacatgaatataa 540
|||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 atttgtgggccttagaattttccttttgaaaataagtctatatatgtaacatgaatataa 740
Query: 541 aagcaca 547
|||||||
Sbjct: 741 aagcaca 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_p12.g1 MSMg01no411_p12.g1 CHROMAT_FILE:
MSMg01no411_p12.g1 PHD_FILE: MSMg01no411_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:11 2005
(428 letters)
>mm_chr3_147418716_147419536
Length = 821
Score = 451 bits (233), Expect = e-131
Identities = 329/407 (80%), Gaps = 77/407 (18%)
Strand = Plus / Minus
Query: 22 ttttctggcttaactgatagtcttcttattttcctttcccctgcaggactctagctttct 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ttttctggcttaactgatagtcttcttattttcctttcccctgcaggactctagctttct 762
Query: 82 ttggaggactttctttctttagattgaaattttaattttctgctctctctctctctctct 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttggaggactttctttctttagattgaaattttaattttctgctctctctctctctctct 702
Query: 142 ctctctctctctctctctctctctctctctgtgtctctctctctgtgtgtgtgtgtgtct 201
|||||||||||||||||| | |||| |||||||||||||| |
Sbjct: 701 ctctctctctctctctct---------t-tgtg----------tgtgtgtgtgtgtg--t 664
Query: 202 gtgtgtctgtgtgcatgtttgagagaaagagagagagagatatagagagagagagagaga 261
||||| |||||||||||||
Sbjct: 663 gtgtg--tgtgtgcatgttt---------------------------------------- 646
Query: 262 gagagagagagagagagagagagagaatgtatgcttgtattcacttggtgagtaaacatg 321
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 645 ------gagagagagagagagagagaatgcatgcttgtattcacttggtgagtaaacatg 592
Query: 322 tctagtggaggtcagaatgggtcatcagtcagggaggaactcagaaagcaggagagttaa 381
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 591 tctagtggaggtcagaatgggtcatcagtcagggaggaactcag-aagcaggagagttaa 533
Query: 382 ctttaattgttaagaaagttaagtggcaagccaaaatgactaagagt 428
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 c------tgttaagaaagttaagtggcaagccaaaatgactaagagt 492
Score = 72.3 bits (37), Expect = 6e-17
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 249 agagagagagagagagagagagagagagagagagag-agaa 288
|||||||||||||||||||||||||||||||||||| ||||
Sbjct: 684 agagagagagagagagagagagagagagagagagagcagaa 724
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 245 agagagagagagagagagagagagagagagagagag 280
||||||||||||||||||||||||||||||||||||
Sbjct: 684 agagagagagagagagagagagagagagagagagag 719
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 247 agagagagagagagagagagagagagagagagagag 282
||||||||||||||||||||||||||||||||||||
Sbjct: 684 agagagagagagagagagagagagagagagagagag 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 29
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 6
Length of query: 428
Length of database: 821
Length adjustment: 9
Effective length of query: 419
Effective length of database: 812
Effective search space: 340228
Effective search space used: 340228
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
