NCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGCTCTCTCCAGCTGAAGAAAAAAAAACAAAGCTTTTTTT
CTAGACCATTACACTTTAGTTTTCTGACTGGCAAATCTCTGATCAATATT
GAGGATAAAGAAACAATGACCAAGACATGTCTAAAACTCATGATAGGTGT
TAGCTAAATAAAATGTATTTAGAGATTTTTCAAAGCTTTGGTTTGCTGGA
CACAGAAGAGTAACGACCATGATGAAAAGCTGTGACAAGTGGCTGTATTA
ATTTTTCACAGCATTACCTTTCATGAATAAGATTGTCCTTGAGCAAACAG
CTAACTAATCTTTCTGTGGTCTCAACACTGTTTAACAAGGAACAGGAAAG
CAGGTTTGATCTCAGTAATGCCCAGAAAAGCCCACTTTTTCTATTTTCAA
GAACAAGGAAGCAAAGAAAAGCAAACTGTGTTTGAAGGATGTAAGAATCA
AATAGATAAGACACCTACTAAGTTCCTAAGATAAATGTATTATCAAAGAA
GCTGGGTCAGGATTTCCTGTTTTCTTACCTTAGTGCATTATCTGAATACA
GCAAAAAAATGCATCAGTACCTAGTGTGGTGATATTCAACCATGAAATTA
TTTAATTACCTCATTATTATAACTTTGCTACTGTTTGAATCATACTGGAA
ATATTAAATATGCAGGAAATCCCAAATTTATTCTCCCACAGGGGTAGGGA
CCCTCG

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGAGGCTAGGAAGAA
TGTCCTGGGCATGGATGGGAGGCCCTCTAAGATGGGAGGGCAACTGAAGA
TAAGGAGCACCTAAAAGCCTATCGCCAGGCTCTAATGGCAGGTCTCATCT
CTGTGGGGCTGGGAAGTGCTCCACCAATCTGACTAAGGAAAAAGGAAGTT
ACAGAAGTTAAAAGGTTTGCAGGACAAGTCAGTAAGAGAGTTATGCAGGT
TGATAAGAAAGTATAGAGGAGGAGAAATGAAGGAAAGATGGAAGGAAGGA
AGGAAGGAAGGAAGGAAGGAAAGTGNTGNTAAGAAGTAAGNTAAGAAGAG
AGAAAGATTANATTTATAGAGAATCTAGGTTAGATTTATATGGGAAGGAA
GAGCAAAGTTTTTTTAGAAATATTGAGTAATTGATTTTGGAGAGATAGAT
GATTTTGTTTTATGGAGAGATTAATTGTGTGTTAATAGTTTTNAGTATTA
GGTATGGTTTTATTATAATAGAAGTGTTTTTGTTTTATATTATGGGGGGG
ATTTTTGGAAATTTTGTTTGTNTTTAGTTTAATAGGTTATATTTTTATGT
TTTATGGTTTTGTTTTTTTTTGAATGTTTTTTTTTTTTTTAATGTGGGAA
TTTTTTTTGTTGTTTTTTGGTTTATTTGTTTCTTTTTTCTTTTN

Query= MSMg01no412_b08.b1 MSMg01no412_b08.b1 CHROMAT_FILE:
MSMg01no412_b08.b1 PHD_FILE: MSMg01no412_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:20 2005
         (562 letters)



>mm_chr3_70033516_70034478
          Length = 963

 Score = 1031 bits (533), Expect = 0.0
 Identities = 551/557 (98%), Gaps = 2/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgctctctccagctgaagaaaaaaaaa-caaagctttttttctagaccattac 63
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 204 gaattcatgctctcttcagctgaagaaaaaaaaaacaaagctttttttctagaccattac 263

                                                                       
Query: 64  actttagttttctgactggcaaatctctgatcaatattgaggataaagaaacaatgacca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actttagttttctgactggcaaatctctgatcaatattgaggataaagaaacaatgacca 323

                                                                       
Query: 124 agacatgtctaaaactcatgataggtgttagctaaataaaatgtatttagagatttttca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agacatgtctaaaactcatgataggtgttagctaaataaaatgtatttagagatttttca 383

                                                                       
Query: 184 aagctttggtttgctggacacagaagagtaacgaccatgatgaaaagctgtgacaagtgg 243
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 aagctttggtttgctggacacagaagagtaacgaccttgatgaaaagctgtgacaagtgg 443

                                                                       
Query: 244 ctgtattaatttttcacagcattacctttcatgaataagattgtccttgagcaaacagct 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 ctgtattaatttttcacagcattacctttcaggaataagattgtccttgagcaaacagct 503

                                                                       
Query: 304 aactaatctttctgtggtctcaacactgtttaacaaggaacaggaaagcaggtttgatct 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 aactaatctttctgtggtctcaacactgtttaacaaggaacaggaaagcaggtttgatgt 563

                                                                       
Query: 364 cagtaatgcccagaaaagcccacttttt-ctattttcaagaacaaggaagcaaagaaaag 422
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 cagtaatgcccagaaaagcccacttttttctattttcaagaacaaggaagcaaagaaaag 623

                                                                       
Query: 423 caaactgtgtttgaaggatgtaagaatcaaatagataagacacctactaagttcctaaga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaactgtgtttgaaggatgtaagaatcaaatagataagacacctactaagttcctaaga 683

                                                                       
Query: 483 taaatgtattatcaaagaagctgggtcaggatttcctgttttcttaccttagtgcattat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaatgtattatcaaagaagctgggtcaggatttcctgttttcttaccttagtgcattat 743

                            
Query: 543 ctgaatacagcaaaaaa 559
           |||||||||||||||||
Sbjct: 744 ctgaatacagcaaaaaa 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space:   526056
Effective search space used:   526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)