BAC Information

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BAC

Clone NameMSMg01-412G02
Chromosome3 (Build37)
Map Location 116,381,666 - 116,382,067
singlet/doubletsinglet
Overlap geneSlc35a3
Upstream geneEdg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1
Downstream geneAgl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412G02.T7 (MSMg01no412_g02.b1)MSMg01-412G02.TJ (MSMg01no412_g02.g1)
ACCAG509167AG509168
length760751
length of high quality
(start - end)		388 (49 - 436)398 (81 - 478)
definitionCHROMAT_FILE: MSMg01no412_g02.b1 PHD_FILE: MSMg01no412_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:43 2005CHROMAT_FILE: MSMg01no412_g02.g1 PHD_FILE: MSMg01no412_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCACAGATGCGAGATTGCCAAAGTGGCCTAACCAGTTTGCC
ATCCCACCAACAGTGAGGGAGGGTTCCCTTCTCCCCACTCCTAGAGTTCG
TTGTCACTTGTGTTGCTGCTGATCTTTGTCACTGTGACTTGGGTAAAATG
AGTCCTCAAAGTTGTTTTGATTTGTATTTTCCAAATTGCTATGGAAAATG
AACATTTTTTTGAAATTTTTTTAGCTTTTTGTTTTTTTTTTTTTTTCTTT
CTTTTAAGAATTCTCTGTTTAGGTCCCAGCCCCACCTCCCCTGCCCCGAC
TCCCACCCCTCCCTTTTTAATGAGTTTTGTCTTTTTGACTGTTTGTTTCT
TGAGTTCTTTATATGTTTGGCATATTAATCTCCTGTCAAATGTATAGCTG
ACAGATTCTCTTCAGTTCTGTGGTCTTCCGCCTCACCGAGTTGTTTGTTT
CTTGAGTTCACTCAATCCTTTTATTTTATTAACTTTCATTTTGTTCCTGT
TGTCCTACCTACCCCTGGTTCATGTCCGTTATTATCGGCTTTTTTTTTTT
GGCTTTTCTCCGTTTACTCTCTTCACCCCTTTTTTTTCATTTCTTTATTG
TCCTTCCCTTCTATATTTTACCTACCTCTCCCCCTTATCCCTTATACCTT
ATTATCCCTTAACCCTTCTTCCACTTTCATAATCTCCATTTTATAATCCC
TTCCCCTTTC

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAATGAAGTTCACTGAGC
CAATTTCCTCTAACAGTGAGACTTGAGTAGTAAGTACAGAATCTGACGAT
GGCTTCGACCATTTCCTAGCCTGGAGTTTTGGTTATCAAGTATTGTATTT
TTTTTTTAAATCTTAAAAATAAAGTTTATTGTTTTTAAAAAACTTACAAA
TAAAGAGCACCACCTGTGGAGAGTAGCCAGTCATAGACTCTATAACTCTG
AACTTATATACATTTAGAGCAGGCATTTGAACGGAAAGCTGTGGCACTTC
ACATTTGCACTTTTACTGTCAAGTATATTTTTATGCACATGTCCACTACC
AAAATAAAAAAAAAGTCCCTGACAGACTTATAACTAGAAAAGCAGTTAGC
TTTATATTCTTTTTTATAACTCATGTTCACTGCTTGTATTAATTAANATG
CTTACAAAGAAATTCTATGTCACATATGGCAGTTTTCTTGGGTATAATTA
TGAAGGTTCCCCTGGCCAAATGGGGTCTATACATTAGGAAATTTGGTGCT
ACCCGTGGCCCTCCCCCTCCTTTAGGTTTTTTTTATTTAATTTCCCTGGG
TAGGGCCCCCCCCCCCTCCTTTTCAATTACTAAATTCCTCGCAGCTCTCT
CCCCTTTCCCTTGATGCGTCTTCTTCTCTTGGTGATTATTCCCCCTTTTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_g02.g1 MSMg01no412_g02.g1 CHROMAT_FILE:
MSMg01no412_g02.g1 PHD_FILE: MSMg01no412_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:43 2005
         (398 letters)



>mm_chr3_116381304_116382100
          Length = 797

 Score =  702 bits (363), Expect = 0.0
 Identities = 390/403 (96%), Gaps = 8/403 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   caatgaagttcactgagccaatttcctctaacagtgagacttgagtagtaagtacagaat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 caatgaagttcactgagccaatttcctctaacagtgagacttgagtagtaagtacagaat 705

                                                                       
Query: 63  ctgacgatggcttcgaccatttcctagcctggagttttggttatcaagtattg------- 115
           |||| ||||||||||||| ||||||||||||||||||||||||||||||||||       
Sbjct: 704 ctgatgatggcttcgaccgtttcctagcctggagttttggttatcaagtattgttttttt 645

                                                                       
Query: 116 tattttttttttaaatcttaaaaataaagtttattgtttttaaaaaacttacaaataaag 175
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttttttttttttgaatcttaaaaataaagtttattgtttttaaaaaacttacaaataaag 585

                                                                       
Query: 176 agcaccacctgtggagagtagccagtcatagactctataactctgaacttatatacattt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agcaccacctgtggagagtagccagtcatagactctataactctgaacttatatacattt 525

                                                                       
Query: 236 agagcaggcatttgaacggaaagctgtggcacttcacatttgcacttttactgtcaagta 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agagcaggcatttgaacggaaagctgtggcacttcacatttgcacttttactgtcaagta 465

                                                                       
Query: 296 tatttttatgcacatgtccactaccaaaataaaaaaaaagtccctgacagacttataact 355
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 464 tatttttatgcacatgtccactaccaaaat-aaaaaaaagtccctgacagacttagaact 406

                                                      
Query: 356 agaaaagcagttagctttatattcttttttataactcatgttc 398
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agaaaagcagttagctttatattcttttttataactcatgttc 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 797
Length adjustment: 9
Effective length of query: 389
Effective length of database: 788
Effective search space:   306532
Effective search space used:   306532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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