BAC Information

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BAC

Clone NameMSMg01-412L18
Chromosome3 (Build37)
Map Location 137,369,602 - 137,369,901
singlet/doubletsinglet
Overlap geneLOC668874
Upstream genePpp3ca, LOC668870, LOC100039447, Emcn, EG229862, Ddit4l
Downstream geneH2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412L18.T7 (MSMg01no412_l18.b1)MSMg01-412L18.TJ (MSMg01no412_l18.g1)
ACCAG509435AG509436
length764770
length of high quality
(start - end)		448 (44 - 491)470 (76 - 545)
definitionCHROMAT_FILE: MSMg01no412_l18.b1 PHD_FILE: MSMg01no412_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:12 2005CHROMAT_FILE: MSMg01no412_l18.g1 PHD_FILE: MSMg01no412_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCCTATACTGGCGCATAGTACCTACACAGGACCAAGGGCCTCTCCTC
CCATTGATGACTGACTTGGCCATCCTCTGCTACATATGCAGCTGGAGCCA
TGAGTCCCACCATGTGTACTCTTTGATGAATGATTTAGTCCCTGGAAACT
CTGGGGAGGGAAGGGGTACTGGTTAGATCATATTGTTGTTCCTCCTATGG
GGCTGCTAACCCCTTCAGCTCCATGTTCCTTTCTCTCGCTCCTTCATTGG
GGACTCTGTGCTCACTCTATATGTAGGCTGCAAAGATCCACCTCTGTATT
TGTCAGGCACTGGTGGAGCCTCTCCAGAGTCAGCTATAACTGGCTTCTGT
GTCAGTAAGCACTTGTTAGTGTCCACAAAAGTGTCTGGGTTTGGTGATTG
TATATGGGATGGATCCCCAGGTGGGGCAGTCTCTGGATGGTCATTCCTTC
AGCTTCTGCTCCAAACTTTGCCTCTGTATCTCTTTGCATGGAAATTTTGC
TCCCCCTTCCATGAAGGATTTTAGTATCTACCCTTTTGGCCCTCCCTCTT
CCTGAGTTTCCAGTGGCTTCGAAATTTGTTCCTACATACCCCTAGCCTCT
GGCCTAATATTCTTTTATTTACGTATTGTCTCTATTATGTGTCCCCTCTT
TTTTGTTCCCCCCCCCCACCCCTATAACTTTTTACTCTCCCTTCCCCCCT
CTCTTATTCTCTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGGCTGTGTTAAAGGATTAGGTA
ACCCCATCCCTCAAACCCACACAGCACACATGACCTCTTCCTTGGGCTAG
CACTATTCTATACATAAGGCTTTACGTTGTGGACATTTCCATAGTTCTGG
CATCTCTGACACTGGGCTCTCTATTGTAAAATTGGCACCACCTTCAGAGC
TTCATAGAGTTCCCTCTCAGGGGAACCTTGTTCGGACCTCAACACTATGA
CACAGTGCCTGGAGCCATGGGGCAAGACTCCATGACTCTCAATCATGCAT
CTTTTATGTTTGCATGACCAATACACATAGATTGATCCTGTCAAATTCTG
CTGCCAGCTTGGGATGGAGCCCAGCCCCCACCAACCACAGCTGTACCAAC
ACCTATGCAGACTCTAGGACAGCTCTACTTTAGGCAGCATTAGGTACAAA
GGAGACCCATTTCCCCAGATTCCAAAGGGTGGTCCAATACCCAGAAATGG
CCTTAACCTGGACTATTGGAAGATTCCTGGCATTTAGATAAAAGCCAGCA
TTCTCATGAAGTTGGGTTCCTCTACAAAAAGCACTCCTTTCTTTTAAGTG
GCAAAAAGGACCAATATCTTCCCTGTGGGCTCCCTCGAACCACAAGTTCC
TGGAACGTTTTTTTTCCCCCTCCCCCCTAGTTTTTTTCACCCCTTTTTTC
CTGAATTCTGATACCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_l18.g1 MSMg01no412_l18.g1 CHROMAT_FILE:
MSMg01no412_l18.g1 PHD_FILE: MSMg01no412_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:12 2005
         (470 letters)



>mm_chr3_137369032_137369901
          Length = 870

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 171 agagcttcatagagttccctctcaggggaaccttgttcggacctcaacactatgacacag 230
           ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 870 agagcttcataaagttccctctcagggaaaccttgttcggacctcaacactatgacacag 811

                                                                       
Query: 231 tgcctggagccatggggcaagactccatgactctcaatcatgcatcttttatgtttgcat 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tgcctggagccatggggcaagactccatgactctcaatcatgcatcttttatgtttgcat 751

                                                                       
Query: 291 gaccaatacacatagattgatcctgtcaaattctgctgccagcttgggatggagcccagc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gaccaatacacatagattgatcctgtcaaattctgctgccagcttgggatggagcccagc 691

                                                                       
Query: 351 ccccaccaaccacagctgtaccaacacctatgcagactctaggacagctctactttaggc 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 690 ccccaccaaccacagctgtaccaacacctatgcagactctaggacagctctactttagga 631

                                                                       
Query: 411 agcattaggtacaaaggagacccatttccccagattccaaagggtggtccaatacccaga 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agcattaggtacaaaggagacccatttccccagattccaaagggtggtccaatacccaga 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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