Query= MSMg01no412_p19.b1 MSMg01no412_p19.b1 CHROMAT_FILE:
MSMg01no412_p19.b1 PHD_FILE: MSMg01no412_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:32 2005
(526 letters)
>mm_chr3_80781910_80782834
Length = 925
Score = 924 bits (478), Expect = 0.0
Identities = 511/522 (97%), Gaps = 1/522 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttttgaattatctgaaattgtagctttcatcctttagataatatttatgttca 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttgaattatatgaaattgtagctttcatcctttagataatatttatgttca 263
Query: 64 agggtcaggctcagagcaatcatcttgaagctgactgccaagagggaagtgtgaacaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggtcaggctcagagcaatcatcttgaagctgactgccaagagggaagtgtgaacaaag 323
Query: 124 acaggctgtatttttctgatgaagaatccagcttatccgttctcagaacctttagaaact 183
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 324 acaggctgtatttttctgatgaagaatccagcttgtccgttctcagaacctttagagact 383
Query: 184 gtactttgcacctgacagtcatttctacatgctaacagatttctggcactctgcaaagaa 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 gtactttgcacctgacagtcatttctacatgctaacagatttctggcactctgcaa-gaa 442
Query: 244 agccactccattagagcaggcgccgcacgcacgtgtcctcatccccagccatcctgaggc 303
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 443 agccactccattagagcaggcgccacatgcacgtgtcctcatccccagccatcctgaggc 502
Query: 304 tgttatgccatccatctttcagacctcacaactgtgggagaagaggcagagagattcagt 363
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 503 tgttatgccatccatctttcagacctcacaactttgggagaagaggcagagagattcaat 562
Query: 364 gcttccgaagaaatcttatgccagctgctgatgtcagttttccacctgtttgtcttataa 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcttctgaagaaatcttatgccagctgctgatgtcagttttccacctgtttgtcttataa 622
Query: 424 tgagctccaattttatatggagacagaactgccacaaagggaaggctaggacaaccagaa 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 623 tgagctccaattttatatggagacagaactgccacaaagggaaggctaggacaatcagaa 682
Query: 484 agtctcactggttccttattggtatgatgcagcttattttag 525
|||||||||||||||||||||||||||||||| |||||||||
Sbjct: 683 agtctcactggttccttattggtatgatgcagtttattttag 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space: 472140
Effective search space used: 472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_p19.g1 MSMg01no412_p19.g1 CHROMAT_FILE:
MSMg01no412_p19.g1 PHD_FILE: MSMg01no412_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:32 2005
(472 letters)
>mm_chr3_80982875_80983746
Length = 872
Score = 839 bits (434), Expect = 0.0
Identities = 465/480 (96%), Gaps = 8/480 (1%)
Strand = Plus / Minus
Query: 1 tttcctcggttggacagacttctttcttcagaacattgacatgaaatatgacgaagggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttcctcggttggacagacttctttcttcagaacattgacatgaaatatgacgaagggac 546
Query: 61 agcgccctctccccaatatccactaaactgctttgttctttgcccatataattaataact 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 545 agcgccctctccccaatatccactaaagtgctttgttctttgcccatataattaataact 486
Query: 121 gtctggcaatcagtcatgcattcttcaacagtacctgaggcactaagtgtccttctaacc 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 485 gtctggcaatcagtcatgcattcttcaacagtacctgaggcaccaagtgtccttctaacc 426
Query: 181 cctcctgacagaggaaacctccatgatggctgtgcacagacttaactccacataagccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cctcctgacagaggaaacctccatgatggctgtgcacagacttaactccacataagccat 366
Query: 241 ttacaagttaggatgaaggaaagcatccctgggttcggatgcagcccagaagccagatgt 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 365 ttacaagttaggatgaaggaaagcatccctgggttcagatgcagcccagaagccagatgg 306
Query: 301 cactctttccatgcagcactacagaatttttgttttattcaattggtggcagtggcatta 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 305 cactctttccatgcagcactacagaatttttgttttattcaattggtggcggtggcatta 246
Query: 361 gtttgtttccgttttatataattcaaccaacaaaaataa--------caaaaacttctgt 412
|||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 245 gtttgtttccattttatataattcaaccaacaaaaaaaaaaaaaaaacaaaaacttctgt 186
Query: 413 atccaagcgggtatcactgaatatacacacttggatagaggtaaatcattttataaagtg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atccaagcgggtatcactgaatatacacacttggatagaggtaaatcattttataaagtg 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
