ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATGCATCCCTGTGAAGATGACATCGTGTGTAAATGTACCACCGAGGA
GAACAAGGTGCCCTACTTCAACGCCCCTGTTTACTTAGAAAACAAAGAGC
AAGTCGGGAAAGTGGATGAGATATTTGGACAGCTTAGAGATTTTGTATCC
TTTCTGATTGGGTGAGTCAGCAATCTTGTTAAGAATTATCGTGTCCCTTC
CTCCCCAGCCAGAAATATCAAAGCAAACTCACTGTTTCATTCAGTGAGAT
AGCAAAGCTACAGACGAGTCTCACGGAGGAGGATCTGTAGGGAGCGCATC
CGTCCATATTTAAAAATGATGCGCCAAGGAGAGATGGCTGTCCTCTGGGT
TCTGGGAGTGGTGGCCATTTGAATACGTGCCACCAGATTGTATTGGCTCT
TCTGTCTCTTGGGTTTTTGGTTTTGTTTTAATTATTTTAAAGAAAATGCC
ATTTCTACTTGGAAATTTCTTATAGCTAGGCATTCTTAGTGTCTTTTTCC
TTAATTTAATTAATAGTATTTTTCAGTTAAGTTGTCAGAAAACATGAAGG
CATCTTCCTTTAAAAAGCTACAGAAGGTGAGTCAAACTTAAATTAAGATT
TTGGATTCGGGGGGGGGGGGGGGGNNGNNNNNNNNNNNNNNNNNNNNNNN
NN

CGCCTGCCGACAGGCGCCGTCCTCCACTATTCAAAAAAGGGGTGGATTCC
CCAATTTTCCCCAAGAAGGGGAGGAAGGAAATATCTTAGACCCGCGACCC
TCACCTCTCTGCGCCGGCGCCAACGCAGTGGATAGACCACCTCAGGACAT
TACGCGTGAATATACCCCGCGAGGCTTTCGTGCGATCCATTCCGCCCACT
ACTATCGCTGGTGCACCGTCAAGCACCAAAAATGCCGATATGCAACCATC
GTACGCGCCCCTCACAATCCCCAAAAGACAGCTCTTCGTCATCGTTCACC
GAGCAACATATATCTCTCCCTCAACCCATACTTATCGACCCACAACATCA
ATTAACCCACCCGCTATTTCCCCATATCCCCGCATCCCCCTTATCACTCC
CTACAGCCAAGCATACCCACAATCATCATGACGCCGGGTCCCCCCCGGAC
ATTGTTGTTGCCTCCTTTTCTAACCATCCCACGCGCCTACACCACACACA
CCATCTATATCAACTCACTCCACCCTCCTTACCGTGCCCCTTCTAACCAC
TTATAATTTATGATGTAATACCCATCTAGTCCACAACCCTTACAGTCCTA
TACCATACGATTATTCCCTGCCACTTTTGCCTCGTTTCACCCGCTCCCAA
TGAAACGCCGTCAACAATCTCTCCTATACATATTTCACCCGCGCCTATTA
TACAACGCCATTTTATCCTATCTTTATCTTACTCCCACTGATCTCTCTTA
ATACCCTTATTTGCCTCTCCACACCCGTCTCAACACTTACAAAATGATCA
TAACCACCAACCCTCA

Query= MSMg01no413_b18.b1 MSMg01no413_b18.b1 CHROMAT_FILE:
MSMg01no413_b18.b1 PHD_FILE: MSMg01no413_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:41 2005
         (590 letters)



>mm_chr3_129531612_129532601
          Length = 990

 Score = 1133 bits (586), Expect = 0.0
 Identities = 586/586 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgcatccctgtgaagatgacatcgtgtgtaaatgtaccaccgaggagaacaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gaattcatgcatccctgtgaagatgacatcgtgtgtaaatgtaccaccgaggagaacaag 731

                                                                       
Query: 65  gtgccctacttcaacgcccctgtttacttagaaaacaaagagcaagtcgggaaagtggat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gtgccctacttcaacgcccctgtttacttagaaaacaaagagcaagtcgggaaagtggat 671

                                                                       
Query: 125 gagatatttggacagcttagagattttgtatcctttctgattgggtgagtcagcaatctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gagatatttggacagcttagagattttgtatcctttctgattgggtgagtcagcaatctt 611

                                                                       
Query: 185 gttaagaattatcgtgtcccttcctccccagccagaaatatcaaagcaaactcactgttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gttaagaattatcgtgtcccttcctccccagccagaaatatcaaagcaaactcactgttt 551

                                                                       
Query: 245 cattcagtgagatagcaaagctacagacgagtctcacggaggaggatctgtagggagcgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cattcagtgagatagcaaagctacagacgagtctcacggaggaggatctgtagggagcgc 491

                                                                       
Query: 305 atccgtccatatttaaaaatgatgcgccaaggagagatggctgtcctctgggttctggga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atccgtccatatttaaaaatgatgcgccaaggagagatggctgtcctctgggttctggga 431

                                                                       
Query: 365 gtggtggccatttgaatacgtgccaccagattgtattggctcttctgtctcttgggtttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtggtggccatttgaatacgtgccaccagattgtattggctcttctgtctcttgggtttt 371

                                                                       
Query: 425 tggttttgttttaattattttaaagaaaatgccatttctacttggaaatttcttatagct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tggttttgttttaattattttaaagaaaatgccatttctacttggaaatttcttatagct 311

                                                                       
Query: 485 aggcattcttagtgtctttttccttaatttaattaatagtatttttcagttaagttgtca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aggcattcttagtgtctttttccttaatttaattaatagtatttttcagttaagttgtca 251

                                                         
Query: 545 gaaaacatgaaggcatcttcctttaaaaagctacagaaggtgagtc 590
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gaaaacatgaaggcatcttcctttaaaaagctacagaaggtgagtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)