Query= MSMg01no413_f06.b1 MSMg01no413_f06.b1 CHROMAT_FILE:
MSMg01no413_f06.b1 PHD_FILE: MSMg01no413_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:58 2005
(408 letters)
>mm_chr3_143526269_143527076
Length = 808
Score = 692 bits (358), Expect = 0.0
Identities = 403/436 (92%), Gaps = 29/436 (6%)
Strand = Plus / Plus
Query: 1 attggaaggtttcggttttcccatttctttgatggttggttcttttgtagggctgatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 attggaaggtttcggttttcccatttctttgatggttggttcttttgtagggctgatgga 233
Query: 61 gacctggcatagccaattccctttccaactctgctgctttgttttgtttctttttgtttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aacctggcatagccaattccctttccaactctgctgctttgttttgtttctttttgtttt 293
Query: 121 gttttgtttttaaagcaattgctgcaatgattggaagagcatgccttttctccacagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gttttgtttttaaagcaattgctgcaatgattggaagagcatgccttttctccacagaca 353
Query: 181 ggctgcacttgcatctccttggtgttagggacatcatggctgctgctttctattggccct 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 354 ggctgcacttgcatctccttgg-gttagggacatcatggctgctgctttctattggcctt 412
Query: 241 ctgactctgacacttgcacccagcttggtgagtgtgtgtgtgtgtgtgtgtgtgtgtgt- 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctgactctgacacttgcacccagcttggtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtg 472
Query: 300 ---------------------------agggagagacaaagacaggaaggagagtaattc 332
|||||||||||||||||||||||||||||||||
Sbjct: 473 tgtgtgtgtgtgtgtgtgtgtgtgtgtagggagagacaaagacaggaaggagagtaattc 532
Query: 333 tgctaaagtaaaacaacccagctttaatgcccactaatctcctttagttacccgtttcat 392
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgctaaagtaaaagaacccagctttaatgcccactaatctcctttagttacccgtttcat 592
Query: 393 agtacacaccataaca 408
|||||||||||||||
Sbjct: 593 tgtacacaccataaca 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_f06.g1 MSMg01no413_f06.g1 CHROMAT_FILE:
MSMg01no413_f06.g1 PHD_FILE: MSMg01no413_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:59 2005
(409 letters)
>mm_chr3_143715441_143716249
Length = 809
Score = 775 bits (401), Expect = 0.0
Identities = 407/409 (99%)
Strand = Plus / Minus
Query: 1 tttattctttgtctaccaggggggttttcagagctgaacaaaaagcttgggtagttttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tttattctttgtctaccaggggggttttcagagctgaacaaaaagcttgggtagttttct 550
Query: 61 tcataatgctatgctaccaagcttctgggttcatgacttccggtgccccgcaggaagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcataatgctatgctaccaagcttctgggttcatgacttccggtgccccgcaggaagcaa 490
Query: 121 tgatgtgaacgcctagccatggtctcatgtcagtgagaaagaaggctgggagcgaacccc 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 489 tgatgtgaacgcctagccatggtctcatgtcagtgagaaagaagactgggagcgaacccc 430
Query: 181 aggacccctcccgtgcccccgctgatgcagcccgggtctgcgggcttcagtggctccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aggacccctcccgtgcccccgctgatgcagcccgggtctgcgggcttcagtggctccatg 370
Query: 241 cttccttccattaacacaggagtcatagttttatcttaatgagtcttttcctttttattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cttccttccattaacacaggagtcatagttttatcttaatgagtcttttcctttttattt 310
Query: 301 aggaatatgtgattgtgaccactgacaaaggacgtgccaaggacttagtcagagcccaaa 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 309 aggaatatgtgattgtgaccactgacaaaggacgtaccaaggacttagtcagagcccaaa 250
Query: 361 cttgcaccgctgcgggggttttctcctcatagatttgtccaatgaccca 409
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cttgcaccgctgcgggggttttctcctcatagatttgtccaatgaccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
