BAC Information

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BAC

Clone NameMSMg01-413K18
Chromosome3 (Build37)
Map Location 50,299,083 - 50,464,231
singlet/doubletdoublet
Overlap geneEG621304, LOC100039667
Upstream geneLOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
Downstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413K18.T7 (MSMg01no413_k18.b1)MSMg01-413K18.TJ (MSMg01no413_k18.g1)
ACCAG510150AG510151
length742763
length of high quality
(start - end)		647 (32 - 678)462 (64 - 525)
definitionCHROMAT_FILE: MSMg01no413_k18.b1 PHD_FILE: MSMg01no413_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:25 2005CHROMAT_FILE: MSMg01no413_k18.g1 PHD_FILE: MSMg01no413_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,299,083 - 50,299,725)(50,463,930 - 50,464,231)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACATCATT
GCCTGAACCCAACTGTAGTGTACTCACTGCCTGCACTGTCCTCTATCTGA
CAGCTTCGTCCTACACTGCTCTTAAATAGCCTTCCTTTCTTCCTTTCTTC
TGTTCTCATTAGAATTGGGCATATTCTATCTCTGACTCATTCTGTCAAAT
CTCTGATTTGTCACTTTGTCTGACCCTGGATTAGACATCATTGTTTGGGA
TTAAAGGTGTGTACTAATGGATTCTAGCCAGAGAGATTAAAGATGTCTAC
TAAGAGTATGTCTGCATTCCAGGTGGATCACACAAACCTAGAAGATCTTT
AGATGTGAACAGAGAAGCCATGTTGCTGGATTAAAGTCCACTCATGACCT
AATACCTCAGGATGCTCGGTACCACTTGCTAAGTGAACTTGGACTGTAAA
ACAAAGTTCTGATCTAGGGGAAAGCTCACCGAGCAAATCTTAAATTAATG
CTATTTTATTTTTATATGTTTTGTTTCTATCATATTAATTGATCCTGACC
CCAACTGCAAAAGCGACACAATATAAAAGCATACATTATTTTGTAAATAA
AATGCTCTGCTGATATACACTACCATTTAAGTCAATGCTCTATAAAAGGA
GCAAATATTGACTTAGTACAGATTGTGTTAAGACACACAAAAATCAACTT
ATCACCACCACCCAACCACATATAATCCATCATCCTGCCATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGCACGCTGCCATGGTCGTCATCATTCACATCAACTG
TTCCTTTTTTCCATGAGGACAAGCAGGGTAACTGTATTTTGTCCTTTGTT
TTGTGGATCTGCTGCTGTCTTAGTTAAATTTTACTGTGGTGAAGAATCCA
TGATTATGGCAACTCTTATAAAGGAAACCATTTAATTAAGGTTGGCTTAC
AGTTTCAGAGGCTCAGTCTATTATCATGGAGGGAAGCATGGCAGCGTGCA
GGCAGACATGGTGCTGGAGAAGGCCCTGGGAATTCTACATCTGGATCAGC
AGGCAGTAGGAAGAGAAATATGAGCTGCTAGGGTGAGGTCTGGTCTGAAC
TTCTAGGACCTCAAAGCCCACTCGCCAGGTTCACAAATTTTCCATCACAG
CCACATCTATCCTAACAAGGCCACATCTCCTAATAGTACCACTCCCTTTG
GATCTTAGAGGTGCATTTTTATTGAAATCACCACAGCTGTTTTTGGAATA
AAAATGTCTGGTCTCCTGAAAAAGAGAAAGAACTCTTTTAATTCCTTCCG
CCCAAAGAAAATGCCAATTTTTAATTTATATTTGTAAAGAGAAAAGATAT
TTCCAATTTGATTCTAAATACTACTAAACCCCACTTTTTACGCGAACACT
ATTAAATTCCCAATTTTTTTCTCTTTTTTAAAACCTGAAAATTTTTTGAA
ATTGGGGGCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_k18.b1 MSMg01no413_k18.b1 CHROMAT_FILE:
MSMg01no413_k18.b1 PHD_FILE: MSMg01no413_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:25 2005
         (647 letters)



>mm_chr3_50298879_50299925
          Length = 1047

 Score = 1243 bits (643), Expect = 0.0
 Identities = 643/643 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacatcattgcctgaacccaactgtagtgtactcactgcctgcactgtcctcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacatcattgcctgaacccaactgtagtgtactcactgcctgcactgtcctcta 264

                                                                       
Query: 65  tctgacagcttcgtcctacactgctcttaaatagccttcctttcttcctttcttctgttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgacagcttcgtcctacactgctcttaaatagccttcctttcttcctttcttctgttc 324

                                                                       
Query: 125 tcattagaattgggcatattctatctctgactcattctgtcaaatctctgatttgtcact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcattagaattgggcatattctatctctgactcattctgtcaaatctctgatttgtcact 384

                                                                       
Query: 185 ttgtctgaccctggattagacatcattgtttgggattaaaggtgtgtactaatggattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtctgaccctggattagacatcattgtttgggattaaaggtgtgtactaatggattct 444

                                                                       
Query: 245 agccagagagattaaagatgtctactaagagtatgtctgcattccaggtggatcacacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agccagagagattaaagatgtctactaagagtatgtctgcattccaggtggatcacacaa 504

                                                                       
Query: 305 acctagaagatctttagatgtgaacagagaagccatgttgctggattaaagtccactcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acctagaagatctttagatgtgaacagagaagccatgttgctggattaaagtccactcat 564

                                                                       
Query: 365 gacctaatacctcaggatgctcggtaccacttgctaagtgaacttggactgtaaaacaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacctaatacctcaggatgctcggtaccacttgctaagtgaacttggactgtaaaacaaa 624

                                                                       
Query: 425 gttctgatctaggggaaagctcaccgagcaaatcttaaattaatgctattttatttttat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttctgatctaggggaaagctcaccgagcaaatcttaaattaatgctattttatttttat 684

                                                                       
Query: 485 atgttttgtttctatcatattaattgatcctgaccccaactgcaaaagcgacacaatata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgttttgtttctatcatattaattgatcctgaccccaactgcaaaagcgacacaatata 744

                                                                       
Query: 545 aaagcatacattattttgtaaataaaatgctctgctgatatacactaccatttaagtcaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaagcatacattattttgtaaataaaatgctctgctgatatacactaccatttaagtcaa 804

                                                      
Query: 605 tgctctataaaaggagcaaatattgacttagtacagattgtgt 647
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgctctataaaaggagcaaatattgacttagtacagattgtgt 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_k18.g1 MSMg01no413_k18.g1 CHROMAT_FILE:
MSMg01no413_k18.g1 PHD_FILE: MSMg01no413_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:25 2005
         (462 letters)



>mm_chr3_50463930_50464791
          Length = 862

 Score =  584 bits (302), Expect = e-171
 Identities = 302/302 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcacgctgccatggtcgtcatcattcacatcaactgttccttttttccatgaggacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agcacgctgccatggtcgtcatcattcacatcaactgttccttttttccatgaggacaag 243

                                                                       
Query: 61  cagggtaactgtattttgtcctttgttttgtggatctgctgctgtcttagttaaatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cagggtaactgtattttgtcctttgttttgtggatctgctgctgtcttagttaaatttta 183

                                                                       
Query: 121 ctgtggtgaagaatccatgattatggcaactcttataaaggaaaccatttaattaaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctgtggtgaagaatccatgattatggcaactcttataaaggaaaccatttaattaaggtt 123

                                                                       
Query: 181 ggcttacagtttcagaggctcagtctattatcatggagggaagcatggcagcgtgcaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ggcttacagtttcagaggctcagtctattatcatggagggaagcatggcagcgtgcaggc 63

                                                                       
Query: 241 agacatggtgctggagaaggccctgggaattctacatctggatcagcaggcagtaggaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  agacatggtgctggagaaggccctgggaattctacatctggatcagcaggcagtaggaag 3

             
Query: 301 ag 302
           ||
Sbjct: 2   ag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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