ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGTTATATCTATACTCCATTTTTTTTAAATTGCTTATTTGTT
TTCTTGATCTAGTTTTTTTAGTTCTTTATATGATTTGGATATTAGCCTTC
TATCGGATGTGTAGTTGGTAAAAAATCTTTTCCATTCTATAGGCTGGCGC
TTTTTCCTAAGGATGGTGCCCTTTGCTGGGCAGAAGCTTTTCAGTTTCAT
GAGGTCCTATTTACTAATTGTTGATCTTAATGCCTGTGCTATTGGTGTTC
TGTTCAGAAAGTCTTTTCCTGTGTCTATGAGTTCAAGGCATTTGATCTGT
TTGCATTCTTCTACTGACGGCCATTGAATTTGATCAGCACTATTTGTTGA
AGAACCTGTATTTTTTTTTCCACTTTGATTTCATTAACCAACATGGCTAC
TTCATGCCAATACCAAGCTGTGTTTATTTCTATAAATCTAAAATATAACT
TGAGGTCAGGGATGGTGGTACCCCCAGCAATACTATTATTTAGGACCGGT
TTTGGTATACTGAAGCTTTAAAGAGCGTGTGCGCGTGAGAGTGAGTGCTT
TTCTACTTACTTTCTATTTCTCACACTAACTCTATTTCCTATCAATACCT
CCTCTCCCTTTATTTTTTTTTTTTCTATTCCGATTATATTCCTTTCTTCT
TTCCCTGTTTTTTTTTATATACTATCCATTCTCTTTCAGCCCTCTTCCTT
TCTCCTCCCTATTGCTCCTTTTTTTTTACCCG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCGAATTCCAGGTGCTAGGCTCTGTTGGTGGTCA
CCAGGTTTTGTGCTTTGAGGCAGGCACGGAAATGGGGAAGGAGTTAGTTC
CACTCCTGCAGGTCCCGGGATGAGATTTAAATCTCAAGTTTTGAGATTTC
CAAGGTTTGAACATGCTGCACCTTGCCAGTTCCAAGTCAGTTCCTCTGAA
GTTATACATGCCCCATAGACAACCAAGTGAAATCCTGTCTCAAAGGGAAG
AGACTGGAGGACACAGCAGTAGAGACCCCGTCNGTTGTGTGTGTGAAGAT
GTAGATTCAAGCCCTGGTGCTGGGGAAAATTCTGCTGCACCTGATCCTCC
TGAGTCTCTGCAGTCTTCTAGGCCATGTGATTTTCATCCTCCCTTTGTTG
TGGAATAGTTGGTCACACTGTGAACCCCAAGATTGTGTTGTTTACTGGAG
TAACCTTTTAGTTGTGGTGTGGCTCAGCCCTTTAATTCAAGAACTTTCTT
GATTATTTCAGGATTAGAAAAAGTCAACCATAGGTCAAGAGGCATAACTA
GTATTCAGCTGTACGGAAGCGAACTTATGATTTATTTGGCAAATCCCTTT
TATAGTGAGAGATGAGCCAATATTTGTTTTTTTTGTGACGCACAGTAAAT
TTAATTGAAGGTACTTATCCTCTGTATTGACATTCTGTTCGTCATATCTT
TTACCTTTTATTTTCTTATCATTTTTCTTTTGCTTTCTG

Query= MSMg01no414_k09.g1 MSMg01no414_k09.g1 CHROMAT_FILE:
MSMg01no414_k09.g1 PHD_FILE: MSMg01no414_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:45 2005
         (457 letters)



>mm_chr3_27937078_27937935
          Length = 858

 Score =  795 bits (411), Expect = 0.0
 Identities = 446/458 (97%), Gaps = 1/458 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgctaggctctgttggtggtcaccaggttttgtgctttgaggcaggcacggaaatgg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 201 aggtgctaggctctgttggtggtcaccaggttttgtgctgtgaggcaagcacggaaatgg 260

                                                                       
Query: 61  ggaaggagttagttccactcctgcaggtcccgggatgagatttaaatctcaagttttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaggagttagttccactcctgcaggtcccgggatgagatttaaatctcaagttttgag 320

                                                                       
Query: 121 atttccaaggtttgaacatgctgcaccttgccagttccaagtcagttcctctga-agtta 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 atttccaaggtttgaacatgctgcaccttgccagttccaagtcagttcctctgatagtta 380

                                                                       
Query: 180 tacatgccccatagacaaccaagtgaaatcctgtctcaaagggaagagactggaggacac 239
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tacatgccccatagacaaccaagtgaaaccctgtctcaaagggaagagactggaggacac 440

                                                                       
Query: 240 agcagtagagaccccgtcngttgtgtgtgtgaagatgtagattcaagccctggtgctggg 299
           ||| | |||||||| | | | ||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 agcggcagagaccctgcctggtgtgtgtgtgaagatatagattcaagccctggtgctggg 500

                                                                       
Query: 300 gaaaattctgctgcacctgatcctcctgagtctctgcagtcttctaggccatgtgatttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaattctgctgcacctgatcctcctgagtctctgcagtcttctaggccatgtgatttt 560

                                                                       
Query: 360 catcctccctttgttgtggaatagttggtcacactgtgaaccccaagattgtgttgttta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcctccctttgttgtggaatagttggtcacactgtgaaccccaagattgtgttgttta 620

                                                 
Query: 420 ctggagtaaccttttagttgtggtgtggctcagccctt 457
           |||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ctggagtaaccttttagttgtgatgtggctcagccctt 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space:   379056
Effective search space used:   379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)