BAC Information

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BAC

Clone NameMSMg01-414P14
Chromosome3 (Build37)
Map Location 142,821,682 - 142,822,125
singlet/doubletsinglet
Overlap genenone
Upstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414P14.T7 (MSMg01no414_p14.b1)MSMg01-414P14.TJ (MSMg01no414_p14.g1)
ACCAG511142AG511143
length774858
length of high quality
(start - end)
523 (73 - 595)119 (76 - 194)
definitionCHROMAT_FILE: MSMg01no414_p14.b1 PHD_FILE: MSMg01no414_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:12 2005CHROMAT_FILE: MSMg01no414_p14.g1 PHD_FILE: MSMg01no414_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGATTCTTCCGCTGGGGAAATTACCAGAGTTGGTTCAGGAACG
CACCAGGTCCATCCCGAGACAGACATCAGCTGAAGTTCTACCTAGACATG
CTTTGGACTCTTGGTTTTTGGGGACATTTGAAGTCTCTTGAAATTAGTGT
CAAAACAGAACCAGTGTACAATAGCTCCCACAAAGGTGTGATCTTTTTTC
CCCAATGTGCAGAAACCCTGATCAAAATACTAGAGCCAGCTCCCTTGTGA
GAATCTGGAAGACTAATAGCATATTTTGTAGACAGTGCAGCAGATTCCTT
CAACTAACAGGTCTTGTTTACAAACTCGCTTAAATTGAAAAGTTGCTTCC
TTGATTCTGTTTTAGATGCTATCTGTATGACTCATACCTCTCCCGTTTAT
GCAAATAGAGTAAGAATTCAGCAGACTGTCATCTAAGGTTGTGGTTCCCT
TTACAATGAGCCAAAACAAAAGAATTCAGTGGGTCAGACGCATGAGTAAG
GCTTTGACCCTGCTGCCATTGAAACAGTCACAGGCATTTTGCAGTTGGTG
GTTGTGGAATAGCATGTGGCTCCTGGCACTCTGGGCTCCAATATCCCCAT
TGTGTTCACATCTGTTGCGTCAAATAACATCCCTACTGTGAAATTTGCTC
TCCCGAAAAAATGGCTCTAAACCTGCTCACGGATATTGGGGGGATGGTGA
AGACTTCCCTCCTACTATTTATTT
NNNCCCATTATANNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGTCCCACAAAATTCTGTTGANATCTGTATCCTGTTT
TTAAATCGGATTATTTGTTTTTTTTTTCTTCTTCCTTTTTTGATATCTGG
CATTTGAGTTCCTTATATTTTGTATATTATCCCTCTATCAAATGAATATT
TGNTAAAAAAAATCCTTTTTTTATCTGAACTGCNNNNCTTTTCTAATANT
CCTNNNTTTTTTTCTGNNCTGNNNNNAATGCTTCCNTTCNACCTTCTTTT
TATTTTAAGNNGCCCGGTGGGTGGGTTTGAGGGAGGTGGGGGGGGGGGGG
GGGGGGGCCCCATTATTCCTTTNNNNNNGGCGAAGTGTATTTNNNNAAAA
AAAAAANNNNNNNTTTTTTTTTTTCCCCCCCCATTTTCCCCTATTTTTTT
NNNNNNNNNCCCCCTNCTTTTTTTCTTTCCCNNNNNNNNNTTTNNNNCCC
TTTCTCCTTTGGGTCCCAACTTTCTTTTCCGGGGGGGGGGGGGGGTGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNANNNNNNNNNNN
NNNNNNNNNNNNNNNCNACNNANCGCATCTTTTTTCTTTTTTCCNANCNC
NCNCNNCCNNNNNNNCCANNNNNNNCCCCCAACCCCCACCACACCTTTTT
TTTATTCTCTTATCCTNTTCCCTTNNNCCTNNNNNNTCNNTNNTNTNTTN
NCCNTTCTTNTTCTTTCNNCCCCCNTNTTTCCTCNCTTTNATTTNNTCCT
NTNNNNNNCTTTTTNTTTCTCCCTTCTCTTTATTCCCCTTCCTGGGTGGT
GAGCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_p14.b1 MSMg01no414_p14.b1 CHROMAT_FILE:
MSMg01no414_p14.b1 PHD_FILE: MSMg01no414_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:12 2005
         (523 letters)



>mm_chr3_142821203_142822125
          Length = 923

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  tttggactcttggtttttggggacatttgaagtctcttgaaattagtgtcaaaacagaac 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tttggactcttggtttttggggacatttgaagtctcttgaaattagtgtcaaaacagaac 864

                                                                       
Query: 140 cagtgtacaatagctcccacaaaggtgtgatcttttttccccaatgtgcagaaaccctga 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 cagtgtacaatagctcccacaaaggtgtgatcttttttccccaatgtgcagaaaccctga 804

                                                                       
Query: 200 tcaaaatactagagccagctcccttgtgagaatctggaagactaatagcatattttgtag 259
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 803 tcaaaatactagaaccagctcccttgtgagaatctggaagactaatagcataaagtgtag 744

                                                                       
Query: 260 acagtgcagcagattccttcaactaacaggtcttgtttacaaactcgcttaaattgaaaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acagtgcagcagattccttcaactaacaggtcttgtttacaaactcgcttaaattgaaaa 684

                                                                       
Query: 320 gttgcttccttgattctgttttagatgctatctgtatgactcatacctctcccgtttatg 379
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 683 gttgcttccttgattctgttttggatgctatctgtatgactcatacctctcccgtttatg 624

                                                                       
Query: 380 caaatagagtaagaattcagcagactgtcatctaaggttgtggttccctttacaatgagc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caaatagagtaagaattcagcagactgtcatctaaggttgtggttccctttacaatgagc 564

                                                                       
Query: 440 caaaacaaaagaattcagtgggtcagacgcatgagtaaggctttgaccctgctgccattg 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caaaacaaaagaattcagtgggtcagacgcatgagtaaggctttgaccctgctgccattg 504

                                   
Query: 500 aaacagtcacaggcattttgcagt 523
           ||||||||||||||||||||||||
Sbjct: 503 aaacagtcacaggcattttgcagt 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)