Query= MSMg01no416_d13.b1 MSMg01no416_d13.b1 CHROMAT_FILE:
MSMg01no416_d13.b1 PHD_FILE: MSMg01no416_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:48 2005
(661 letters)
>mm_chr3_120219984_120221044
Length = 1061
Score = 1033 bits (534), Expect = 0.0
Identities = 554/562 (98%), Gaps = 6/562 (1%)
Strand = Plus / Minus
Query: 6 gaattcgtttatt--ttccggttctattcaatgaataagaattgcacacagttctgataa 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaattcgtttatttatt--ggttctattcaatgaataagaattgcacacagttctgataa 502
Query: 64 tgttatctattcagctagtatgtgatttgtagagtttgttcctacaaggcctttaagatg 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttatctattcagctagtatatgatttgtagagtttgttcctacaaggcctttaagatg 442
Query: 124 tatacaacatataccttggttttcaagtgatgtactatttgccttagttttagttgagtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatacaacatataccttggttttcaagtgatgtactatttgccttagttttagttgagtg 382
Query: 184 tacaacttcttactttaaatgtagatcagattgatgctttagtgtaatcatgtgttgtca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaacttcttactttaaatgtagatcagattgatgctttagtgtaatcatgtgttgtca 322
Query: 244 catactgggaaacatgaaacccatgttgttctttgaacaaacaatcaaagaaggtttcat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catactgggaaacatgaaacccatgttgttctttgaacaaacaatcaaagaaggtttcat 262
Query: 304 agggaatcatgacaaagtcacctacatcacaaggtggagctgctacaaatgtggagtgtg 363
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 agggaatcatgacaaagtcacctacatcacaaggtggagctgctgcaaatgtggagtgtg 202
Query: 364 gtgatttgaatggcaaaggtccccataagttcatatattttaacccttgatccccagtga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgatttgaatggcaaaggtccccataagttcatatattttaacccttgatccccagtga 142
Query: 424 gtaaacctgtttgtgaagggttgggagctatgaccttgctggaggagctgtgtcactaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gtaaacctgtttgtgaagggttgggagctatgaccttgctggaggagctgtgtcactaga 82
Query: 484 gtaggcttggagttttccaaagcccatggc-gcttccagtgtctctctgcctcctgtttg 542
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 81 gtaggcttggagttttccaaagcccatggcag-ttccagtgtctctctgcctcctgtttg 23
Query: 543 tgggtttcttgtaatctctctc 564
||||||||||||||||||||||
Sbjct: 22 tgggtttcttgtaatctctctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_d13.g1 MSMg01no416_d13.g1 CHROMAT_FILE:
MSMg01no416_d13.g1 PHD_FILE: MSMg01no416_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:48 2005
(563 letters)
>mm_chr3_120051638_120052602
Length = 965
Score = 1042 bits (539), Expect = 0.0
Identities = 558/565 (98%), Gaps = 2/565 (0%)
Strand = Plus / Plus
Query: 1 catgttctgacttctgggaatacttgggagcactatatgccatgcttcttatttagaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgttctgacttctgggaatacttgggagcactatatgccatgcttcttatttagaaac 260
Query: 61 a--gtgtgccaggtaggctggctaccaggtcatgcctgctttctttcctacactgtaaga 118
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtgtgccaggtaggctggctaccaggtcatgcctgctttctttcctacactgtaaga 320
Query: 119 actcagaaaagaaatagaggacaaagatgaagtgacatcagagattaagacccattttag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcagaaaagaaatagaggacaaagatgaagtgacatcagagattaagacccattttag 380
Query: 179 cacgtggaagaatggacaacattgtgtcactaaaaaaaaaagagattacagactagtaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacgtggaagaatggacaacattgtgtcactaaaaaaaaaagagattacagactagtaag 440
Query: 239 agaaaagaaattatgtttaagaacaatctcagagaaaagaaaaatggagattctaaaaac 298
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaagaaattaggtttaagaacaatctcagagaaaagaaaaatggagattctaaaaac 500
Query: 299 agtctagtaaatttcccctgaaagaaaaccaagaccataaaactgagaaaatgtgaatgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtctagtaaatttcccctgaaagaaaaccaagaccataaaactgagaaaatgtgaatgt 560
Query: 359 aatctattcagttattttatgtatatgtctgtatgtgtgggtttaagtgtgtacacaggt 418
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatctattcatttattttatgtatatgtctgtatgtgtgggtttaagtgtgtacacaggt 620
Query: 419 atgtacatgaatgtccatatgaacatcaagactagagatcaattgtcttattcaaggttt 478
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 atgtacatgaatgtccatatgcacatcgagactagagatcaattgtcttattcaaggttt 680
Query: 479 ctattcctgtacaaacatcatgaccaagaaacaagttggggaggaaagggtttattcagc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctattcctgtacaaacatcatgaccaagaaacaagttggggaggaaagggtttattcagc 740
Query: 539 ttacattttccacattactggtaat 563
|||||||||||||||||||| ||||
Sbjct: 741 ttacattttccacattactgttaat 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 965
Length adjustment: 10
Effective length of query: 553
Effective length of database: 955
Effective search space: 528115
Effective search space used: 528115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
