Query= MSMg01no416_j18.b1 MSMg01no416_j18.b1 CHROMAT_FILE:
MSMg01no416_j18.b1 PHD_FILE: MSMg01no416_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:17 2005
(571 letters)
>mm_chr3_59478072_59479030
Length = 959
Score = 433 bits (224), Expect = e-125
Identities = 464/550 (84%), Gaps = 24/550 (4%)
Strand = Plus / Plus
Query: 25 tatatgtgcaggaatacaatgattcacat--taaatgtatgcgttgcacaattatattga 82
|||||||||||||||||||||| ||| || ||| ||||| ||||| |||||||||||
Sbjct: 225 tatatgtgcaggaatacaatga-tcatataataa--gtatgaattgcaaaattatattga 281
Query: 83 aaagtaaatattttatacctaatttctgaaagtgacattcttttaacagaattaacattg 142
||||||| |||| |||||| ||||||||| || | ||| |||||||||| | |||
Sbjct: 282 aaagtaattattccatacctgatttctgaaggttatatttttttaacagagt----attt 337
Query: 143 tagcaacaatgtttattcaatatgatctacttttatctatgtttttatgcaaaaggatac 202
|||||||||||||||||||||||||| | | ||||| ||||||||||| ||| || || |
Sbjct: 338 tagcaacaatgtttattcaatatgatttgcctttatttatgtttttattcaagagaatgc 397
Query: 203 aggtaggtagattgcaaatatttatatgtaaccatattttatattttattgagatatagc 262
||||||||| |||||||||||||||||| || |||| ||||||||||||||| ||||||
Sbjct: 398 aggtaggtacattgcaaatatttatatgcaaacata-tttatattttattgatatataga 456
Query: 263 tatattctataatctaattaatttgcatatgatgtattcatttcataattggaagtgtga 322
|| ||||||||||| ||||||||||||| ||||||||| |||||| || || |||||
Sbjct: 457 tacattctataatc----taatttgcatatgttgtattcatctcataactgaaaatgtga 512
Query: 323 acttttaaatatgaaaactaaaaatactgactttaaataa-caatttaaagaggttatca 381
|||||||||||||||||||||||||| ||||||||| || |||||||||||| ||||
Sbjct: 513 acttttaaatatgaaaactaaaaatattgactttaag-aagcaatttaaagagaatatc- 570
Query: 382 t-tgcctagagaaatttaagaag-atccatttagtagatgtaatgagataatgcggtttt 439
| || |||||| | ||| || ||| || ||||||||||||||| || ||| | ||||
Sbjct: 571 tctgtttagagagacctaa-aatcatctatctagtagatgtaatgaaattatgtgatttt 629
Query: 440 tt-gttttttgttttttgtgtatcagattagataaaaagtgagaaaaatttgatgtgtgg 498
|| || | | |||||||| |||| ||||||||||||||||| ||| | |||||||| |
Sbjct: 630 tttgtatactattttttgt--atcatattagataaaaagtgaggaaa-tctgatgtgtag 686
Query: 499 atctcaggtcagcactaatttttaatactatacacagaatgtcacaaatttatacgttaa 558
| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 687 agctcaggtcagcactaatttttaatactatacacagaatgtcacaaatgtataagttag 746
Query: 559 aaggaaaaca 568
| ||||||||
Sbjct: 747 agggaaaaca 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 959
Length adjustment: 10
Effective length of query: 561
Effective length of database: 949
Effective search space: 532389
Effective search space used: 532389
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_j18.g1 MSMg01no416_j18.g1 CHROMAT_FILE:
MSMg01no416_j18.g1 PHD_FILE: MSMg01no416_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:17 2005
(497 letters)
>mm_chr3_59734695_59735592
Length = 898
Score = 917 bits (474), Expect = 0.0
Identities = 492/498 (98%), Gaps = 1/498 (0%)
Strand = Plus / Minus
Query: 1 agtaatcacttgttgtcataggcaacattctctcagagttcatgaagaagattgtctgca 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 agtaatcacttattgtcataggcaacattctctcagagttcatgaagaagattgtctgca 639
Query: 61 actcattacaaacatattccataaaactcttgggagaagtattagaatatctgcaattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 actcattacaaacatattccataaaactcttgggagaagtattagaatatctgcaattgt 579
Query: 121 gttgaagatgacattgtaggcagcattataattttcacaaatttagagattcaccataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gttgaagatgacattgtaggcagcattataattttcacaaatttagagattcaccataat 519
Query: 181 ttttatttattaaggaagttttcaatggcaggatatcaatttaaatgtaagacaaggtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttttatttattaaggaagttttcaatggcaggatatcaatttaaatgtaagacaaggtgt 459
Query: 241 accatttagtgttgttagaactaatgaggttcccccccccc-gaggcttacatatttatg 299
|| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 458 actatttagtgcagttagaactaatgaggttcccccccccaagaggcttacatatttatg 399
Query: 300 taagttcaggcaatttaataaatttacagttaaactttaggttgccattctgtatataaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 taagttcaggcaatttaataaatttacagttaaactttaggttgccattctgtatataaa 339
Query: 360 tgagaattttaaatttcactaacatcaaataagaatgtgctcttgcatttgtaatttctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgagaattttaaatttcactaacatcaaataagaatgtgctcttgcatttgtaatttctt 279
Query: 420 ataaaaaattaactgtaaatagttaataaacttaaaagaggtagaaataaatatatgctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ataaaaaattaactgtaaatagttaataaacttaaaagaggtagaaataaatatatgctc 219
Query: 480 ctaaaatttttaacagaa 497
||||||||||||||||||
Sbjct: 218 ctaaaatttttaacagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space: 432456
Effective search space used: 432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
