Query= MSMg01no416_n06.b1 MSMg01no416_n06.b1 CHROMAT_FILE:
MSMg01no416_n06.b1 PHD_FILE: MSMg01no416_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:32 2005
(485 letters)
>mm_chr3_100654284_100655168
Length = 885
Score = 847 bits (438), Expect = 0.0
Identities = 479/506 (94%), Gaps = 21/506 (4%)
Strand = Plus / Plus
Query: 1 cgccaccttgagcccggtgtgaaattccctaactcgactagatttcgattttgatggaag 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cgccaccttgaccccggtgtgaaattccctaactcgactagatttcgattttgatggaag 239
Query: 61 tctgagaaaacgtctgccaggagtctgtgacttgcatgagctacttggagggttgcctgg 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 240 tctgagaaaacgtctgccaggagtctatgacttgcatgagctacttggagggttgcctgg 299
Query: 121 ataggaaaaggctcagcaggcccagtcatcctggcctcttttcttctgaagccctg---- 176
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 300 ataggaaaaggctcagcagccccagtcatcctggcctcttttcttctgaagccctgggct 359
Query: 177 -----------------aacgttcctgagaggctcaggcccagggtctgccagaactgat 219
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtctgctacagacactgaacgttcctgagaggctcaggcccagggtctgccagaactgat 419
Query: 220 gtattttattaaaagatgagagtatctttttgtccttgtttcaaataagatatagctaaa 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 420 gtattttattaaaagatgagagtatctttttgtccttgtttcaaataagatatacctaaa 479
Query: 280 gagtggatgagactaagaaatgtgaaactacagagctgattaattgctattctatctctg 339
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 480 gagtggatgagactaagaaatgtaaaactacagagctgattaattgctattctatctctg 539
Query: 340 ggttggtgagaggcaaagcttataggtttctagactaagggaagtttggagaagccatgt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggttggtgagaggcaaagcttataggtttctagactaagggaagtttggagaagccatgt 599
Query: 400 tttcagtcctatttagttctcaggccccagtggaatctgcttcttagtatctctggataa 459
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 600 tttcagtcctatttagttctcaggccccggtggaatctgcttcttagtatctctggataa 659
Query: 460 ctcttccttcctcccccttcccctcc 485
||||||||||||||||||||||||||
Sbjct: 660 ctcttccttcctcccccttcccctcc 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_n06.g1 MSMg01no416_n06.g1 CHROMAT_FILE:
MSMg01no416_n06.g1 PHD_FILE: MSMg01no416_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:32 2005
(478 letters)
>mm_chr3_100799355_100800232
Length = 878
Score = 878 bits (454), Expect = 0.0
Identities = 472/478 (98%)
Strand = Plus / Minus
Query: 1 caggaaagagatgtgcagctctgaggatctggggaagtgaggaagaagggcctggctagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 caggaaagagatgtgcagctctgaggatctggggaagtgaggaagaagggcctggctagt 619
Query: 61 tgacgtctatccagtatatggtggaggcatgtgtcaacgctggtgcccttttgatattcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgacgtctatccagtatatggtggaggcatgtgtcaacgctggtgcccttttgatattcc 559
Query: 121 agggggtccagccctgaggtttgtaaatttgcttggggaagtgaaaaactgtggctgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agggggtccagccctgaggtttgtaaatttgcttggggaagtgaaaaactgtggctgtct 499
Query: 181 gtcattctctgggaatctggacacctgaggaaactgttgatactctcctagatgggctct 240
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 498 gtcattctctgggagtctggacacctgaggaaactgttgacactctcctagatgggcttt 439
Query: 241 ctgtagggggcccgtcatttcctgacagtgaccactgctataaaaagaagcttctttggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgtagggggcccgtcatttcctgacagtgaccactgctataaaaagaagcttctttggg 379
Query: 301 tagccatggttgagtggcctggcctattctaacacaacatcgcagcctgcttcatttgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tagccatggttgagtggcctggcctattctaacacaacatcgcagcctgcttcatttgac 319
Query: 361 catgcttgccagcgtcatatcacatgcgacccgggggactaattatcattcgcctggatc 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 318 catgcttgccagcgtcatatcacatgcgacccaggggactaattatcattcgcctggatc 259
Query: 421 atttgaaagaagaatgcagaacgaggttagaaaaaaattaaaaattataccaggcatg 478
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 258 atttgaaagaagaatgcagaaagaggttagaaaaaaattaaaaattaaaccaggcatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
