BAC Information

Click to search

BAC

Clone NameMSMg01-417A11
Chromosome3 (Build37)
Map Location 71,704,221 - 71,704,796
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385
Downstream geneLOC100041459, 2010204N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417A11.T7 (MSMg01no417_a11.b1)MSMg01-417A11.TJ (MSMg01no417_a11.g1)
ACCAG512706AG512707
length742747
length of high quality
(start - end)
246 (72 - 317)576 (78 - 653)
definitionCHROMAT_FILE: MSMg01no417_a11.b1 PHD_FILE: MSMg01no417_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:47 2005CHROMAT_FILE: MSMg01no417_a11.g1 PHD_FILE: MSMg01no417_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCATCTGACTGAAACCGAATGGNAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCACCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAA
GAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGT
GTTATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGCTTCCTC
AGAAAATTGGACATATTACCTCNGTAGGATCCCGCAATACCTCTCCTGTT
CATATATACAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTA
TGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTAGAAAGAACCCAGA
CGCCCCTCAACAGAGGAATGGATACAGAAAATCTGGTACATTTACACAAT
GGAATACTACTCAGCTATTAAAAAACGAATTTATGACATTCCTAGGCCAA
TGGATGGTCCTGGAGGGTATCATCCTGAGGGAAGTAATCCATACACACAG
GAACTCACACGATATGTACTCACCGATAAGTGGATATTATCCCCGATTCT
TATGATACCCTCCATACTAGATTTTCTTTCTTACCTATGCTCTTCATTAC
TAATGACGACCTTAGTGTGGACCCTTTACCCTTTCCTAAATA
CCCGATGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGTCATGACATCTCCCAGCT
GCCAGTTTTAAGGAATCACTCACTGCCTTATTTCTGCCAGTGTCAGCTAT
TCAGAAATACATATAGAATTGTAGAATAGGAACTTAAATCTAATTGTAGA
ACAAGCAACACTAACAATGGACAAATTAATTGAGGATGTAGTTATTATCC
TCAAAGATTCATGATCTATTCTTAAACAACAATATGAATTTTATGCTAAA
AAATCCTTTTTGTTTTTTAATTGTCACAATTAACTTTACAAATTGATACC
ACTCTGAACATTTTAAAAACAATTTATTTTTAAGGCTTCATACATGAAGA
ATACAACTGTTTGTTTTTATTGATCAGACTAAGAGAACACTTCATTTGTT
TTACTTAACCAGCTTGGAATAACTGTATTAAGATACTCTGATATTATAAG
TGACAATTTAAAATGATCAAATATAGTAATGAAATATAGAAGACATGTAT
TCCATGTATAAGAATGTTTAACAATATACAACAGAGCATAAACTCATGAG
CCAATTGATATATGAATTGTGTATGAATAAAACAACTTCATTTTTCAAGG
GACCACAGGATATTTCTCGAGTTTAAAATCCAATTTTTATAGAAATATAA
TATTTTCAGGTGCACTTATTTCATCACTAGCTTTTCTCAGGCATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_a11.g1 MSMg01no417_a11.g1 CHROMAT_FILE:
MSMg01no417_a11.g1 PHD_FILE: MSMg01no417_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:47 2005
         (576 letters)



>mm_chr3_71704021_71704996
          Length = 976

 Score =  998 bits (516), Expect = 0.0
 Identities = 561/576 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggtcatgacatctcccagctgccagttttaaggaatcactcactgccttatttctgc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ctgggtcatgacatctcccagctgccagttttaagaaatcactcactgccttatttctgc 260

                                                                       
Query: 61  cagtgtcagctattcagaaatacatatagaattgtagaataggaacttaaatctaattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgtcagctattcagaaatacatatagaattgtagaataggaacttaaatctaattgt 320

                                                                       
Query: 121 agaacaagcaacactaacaatggacaaattaattgaggatgtagttattatcctcaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacaagcaacactaacaatggacaaattaattgaggatgtagttattatcctcaaaga 380

                                                                       
Query: 181 ttcatgatctattcttaaacaacaatatgaattttatgctaaaaaatcctttttgttttt 240
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatgatctaatcttagacaacaatatgaattttatgctaaaaaatcctttttgttttt 440

                                                                       
Query: 241 taattgtcacaattaactttacaaattgataccactctgaacattttaaaaacaatttat 300
           ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 taattgtcacaattaactttataaattgatatcactctgaacattttaaaaacaatttat 500

                                                                       
Query: 301 ttttaaggcttcatacatgaagaatacaactgtttgtttttattgatcagactaagagaa 360
           ||| ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgaagacttcatacatgaggactacaactgtttgtttttattgatcagactaagagaa 560

                                                                       
Query: 361 cacttcatttgttttacttaaccagcttggaataactgtattaagatactctgatattat 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 561 cacttcatttgttttacttaaccagcttgcaataactgtattaagatactctgttattat 620

                                                                       
Query: 421 aagtgacaatttaaaatgatcaaatatagtaatgaaatatagaagacatgtattccatgt 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 621 aagtgacaatttaaaattatcaaatatagtaatgaaatatagaagacatgtaccccatgt 680

                                                                       
Query: 481 ataagaatgtttaacaatatacaacagagcataaactcatgagccaattgatatatgaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataagaatgtttaacaatatacaacagagcataaactcatgagccaattgatatatgaat 740

                                               
Query: 541 tgtgtatgaataaaacaacttcatttttcaagggac 576
           || |||||||||||||||||||||||||||||||||
Sbjct: 741 tgcgtatgaataaaacaacttcatttttcaagggac 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)