BAC Information

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BAC

Clone NameMSMg01-417A22
Chromosome3 (Build37)
Map Location 19,218,674 - 19,219,039
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
Downstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417A22.T7 (MSMg01no417_a22.b1)MSMg01-417A22.TJ (MSMg01no417_a22.g1)
ACCAG512728AG512729
length777776
length of high quality
(start - end)		558 (44 - 601)436 (75 - 510)
definitionCHROMAT_FILE: MSMg01no417_a22.b1 PHD_FILE: MSMg01no417_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:49 2005CHROMAT_FILE: MSMg01no417_a22.g1 PHD_FILE: MSMg01no417_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAAGAACATCACTGAAGGAATACAATAGCAACAGAACAGTAGGAGT
GAGCGCAGACAGGCAAAAAGTTCTTTCTCTACCTTTATGTAGGCTGCCAC
CGGAAGGTGTGGCCCATTTAGGGTGTGTCTTAGTTAGGGTTTTACTGCTG
TGAATAGACACCATGACCAAGGCACCTTTTTATAAGGACAACATTTAGTT
GAGGCTGGCTTACGGGTTCAGAGGTTCAGTCCACTATCATCAAGGCAGGA
ACATGGCAGCATCAGGCAGACATGGTATAGGAGGAGCTGAGAGTTCTACA
TCTTCATCTGAAGGCTGCTAGCAGAATACTGACTTCCAGGAAGCTAGTAT
GAGGGTCTTAGGATGAGTGTGTCTCACCCACAGTGACACACCTACTCCAA
CAAGACCATAACTCCAGGTAGTGCCACTCATGGGGCCAAGCATATTCAAA
CCATGACAGGGTGGGTATCCACCTCAAATGACCAACCAAGAAAATCCTTC
CCAGGTGTACCCAGCTGCCTGGGTTCTAGTTGATTCCAGTTATATTCAGG
TTGACAAGATTAGCTATCATACATGAACACTTAAGTTTACATACATGGAC
CAATATGTGTATGTATGTATCAGTGCTATGGGGAAAAATCAAGCTGGATG
GGAATTAGCCATCACATGAATTATTAACTACTTTGATAAGTCTTACATAT
ATTAATCTCATCCTAAAGCTATCTTCG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGCTATATGCCCCAGGCTGGCTCAC
CCTCACAATTCTGCTGCCTCTGCTTCCCCAGTGCTAGGACCACAGGTGTG
CCCTACCACATCCATTCCTTTGCCTAGTTTTTAATTAAACTCTTTGTCGT
GGGGAAATTCATTAAAGCCTTTGTGTATTGTTTTAGACAAGAGAAAGTGT
CTTGCTATGTAGCTCTAGGTTGGCCTCAAACTCATGATCACCTGCCTCAC
TCTTCATAGTACTGGACTCTAAGCATGTAGTACCATACCTGCCTGTTAAT
AAGCTTTCACCTTGAACATCATTTCATTTTTTGAAAGCAATAACCAGAAT
TACTAATTCTCACTTATTCCCAAGTGAAAAATTTACTATAAAGTTGGCTA
AATTTGTATATCAAGTCTATTCTAAGAATTGTGAATATTAGTAATTCTTG
CATTAGTTGATTTCTAAATTTTGTAAGAGTTGTTTTAATTGCATTTAACC
AAATTCTTATCCTTGTGATTAAGATCAATTTTAATGTAAGTTTCACAGGT
TAAAATAAATTTTATTCTGCTAACATATAATTTATTTCCTGTGCCTATAA
AAGGTTATATTTTAATGGGTTCCCCAAAAATAAATTATTTTTAATTTTTA
AAAAGGGATCCCCTTTTTTTCTTCCTTTTTTAAGGGCGTTATTTCTTTTT
TTCCAATAATATCCTCGTTGGTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_a22.g1 MSMg01no417_a22.g1 CHROMAT_FILE:
MSMg01no417_a22.g1 PHD_FILE: MSMg01no417_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:49 2005
         (436 letters)



>mm_chr3_19218204_19219039
          Length = 836

 Score =  685 bits (354), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 71  ggtgtgccctaccacatccattcctttgcctagtttttaattaaactctttgtcgtgggg 130
           ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 836 ggtgtgccctaccacatccatccctttgcctagtttttaattaaactatttgtcgtgggg 777

                                                                       
Query: 131 aaattcattaaagcctttgtgtattgttttagacaagagaaagtgtcttgctatgtagct 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 aaattcattaaagcctttgtgtattgttttagacaagagaaagtgtcttgctatgtagct 717

                                                                       
Query: 191 ctaggttggcctcaaactcatgatcacctgcctcactcttcatagtactggactctaagc 250
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 716 ctaggttggcctcaaactcatgatcacctgcctcactcttcacagtactggactctaagc 657

                                                                       
Query: 251 atgtagtaccatacctgcctgttaataagctttcaccttgaacatcatttcattttttga 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atgtagtaccatacctgcctgttaataagctttcaccttgaacatcatttcattttttga 597

                                                                       
Query: 311 aagcaataaccagaattactaattctcacttattcccaagtgaaaaatttactataaagt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aagcaataaccagaattactaattctcacttattcccaagtgaaaaatttactataaagt 537

                                                                       
Query: 371 tggctaaatttgtatatcaagtctattctaagaattgtgaatattagtaattcttgcatt 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tggctaaatttgtatatcaagtctattctaagaattgtgaatattagtaattcttgcatt 477

                 
Query: 431 agttga 436
           ||||||
Sbjct: 476 agttga 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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