BAC Information

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BAC

Clone NameMSMg01-417M08
Chromosome3 (Build37)
Map Location 26,480,972 - 26,481,448
singlet/doubletsinglet
Overlap genenone
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417M08.T7 (MSMg01no417_m08.b1)MSMg01-417M08.TJ (MSMg01no417_m08.g1)
ACCAG513273AG513274
length753762
length of high quality
(start - end)
482 (47 - 528)472 (79 - 550)
definitionCHROMAT_FILE: MSMg01no417_m08.b1 PHD_FILE: MSMg01no417_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:45 2005CHROMAT_FILE: MSMg01no417_m08.g1 PHD_FILE: MSMg01no417_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGTTCGCCTCTGTACCCCATTTTTAATTGTGTTGTTTGTTTT
CTTCATAACTAGTTTCTTGAGTCTTTTATATAATTTGGTATTAGCCTTCT
ATAAGATATCTAGTTGGTGAAAAATCTTTTCCCTTTTTGTAGGCGGCTCC
TTTGTTCTAATAACATGAAGTTTATTCATTGTTAATCTTAATTCCTATGA
TAACTGTGTTCTGTTCAGAAAGTCATCTCCTGTGCCAATGAGTTCAAGGC
TATTCCCTATTTTCTCTTCCATCAGATTCCATGTATCTGGTTTTATGTTG
AGGTCTTTGATGAATTTAGATTGAGTTGCTACCCAGATTCAAGTTTCATT
GTCACATGCCTCCCTTCTCTGAATCGTGTGTGATGGCAATAATGCCAGCC
CGATTTGTTTATGGGATGATTAAGTTTCTGCTATTCATAATGCATTTCAC
AAATGTCCTGCTCTCTTGCCCTTAGCTTAGACAAAAAAAATTATCTTCTA
CGTCCTGATCCTGTGTTAGTGTGCAGCGTGCATTCTACACATTTCTCCTA
CTTATTGAATACGTTCCTGTCCTTCATCCATCATTTCTTATCCCCTCCTT
TCCTCTTTCTTTACACCTTTTCCTGCATGTCCTCGCTCATGCTTTCATAT
TCGACATACCTTTCCCCCTTTCGTTCCTTGCATATCGCTTTTTACTCTCC
GCN
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTCCACAGGAGAGAATCCA
TGTCTAGTATTATTAGCTTGTTTAAGAACCCATGCCTGGAGAGGTCGTAG
GTCTAATGGGATACTTATTATTGTTTAAATAAACTGGATAAGATCAAACT
GCCTTCTAAATATCCATTTATACCCATAAGTAAAAACTACTCTCTGCCTT
GATCAAAGAAAGCTCTCTCTGCGTTGAACCACACTGAAGGCAGATTGTTG
CCACAGATGCTGAGAACTGTGATTGCTGAGGACCGGTCCTAAAGAATTAT
TCATATCACCTGCTTTAATGCTCAGAGAATATTTTGAAAGATGGAGTCAG
AAGAATGTACTAGGTGGAAGATAAAGAACAGGGCTATGAAAAGCAATCCT
TTCATTACAGTCAGCAACTCAAAGAAGCTGTGGTTACTCTCAACGAACAT
GCAGAAAATTGGTTTTGTTATACTTGGAGGAAAGAGCTCATGTGCACCAA
CCCCTTACTGCTGAACTAGAACTATCGGTTCCTGGTACATTCTGGGAGAG
AGGCCATCATTGCCTTAAGTTGGGGTCCCACTTCTGAGGCCACTGTGCTG
TGATGGATTCCCTGTAGCCCTTGCTGTCATTGTCTAAATTCCCTACTCCC
CAATTCTAATGCTCGGATTCACACCAATTTTGTTTTTTCAGGCTCTATGG
TCGTTTTCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_m08.b1 MSMg01no417_m08.b1 CHROMAT_FILE:
MSMg01no417_m08.b1 PHD_FILE: MSMg01no417_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:45 2005
         (482 letters)



>mm_chr3_26480768_26481649
          Length = 882

 Score =  837 bits (433), Expect = 0.0
 Identities = 466/477 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgttcgcctctgtaccccatttttaattgtgttgtttgttttcttcataact 64
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgtttggatctgtaccccatttttaattgtgttgtttgttttcttcataact 264

                                                                       
Query: 65  agtttcttgagtcttttatataatttggtattagccttctataagatatctagttggtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtttcttgagtcttttatataatttggtattagccttctataagatatctagttggtga 324

                                                                       
Query: 125 aaaatcttttccctttttgtaggcggctcctttgttctaataacatgaagtttattcatt 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatcttttccctttttgtaggctgctcctttgttctaataacatgaagtttattcatt 384

                                                                       
Query: 185 gttaatcttaattcctatgataactgtgttctgttcagaaagtcatctcctgtgccaatg 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 gttaatcttaattcctatgataactgtgttctgttcagaaagtcgtctcctgtgccaatg 444

                                                                       
Query: 245 agttcaaggctattccctattttctcttccatcagattccatgtatctggttttatgttg 304
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 445 agttcaaggctattccctattttctcttccatcagattctgtgtatctggttttatgttg 504

                                                                       
Query: 305 aggtctttgatgaatttagattgagttgctacccagattcaagtttcattgtcacatgcc 364
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggtctttgatgaaattagattgagttgctacccagattcaagtttcattgtcacatgcc 564

                                                                       
Query: 365 tcccttctctgaatcgtgtgtgatggcaataatgccagcccgatttgtttatgggatgat 424
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 565 tcccttctctgaatcgtgtgtgatggcaataatgccagccagatttgtttatgggatggt 624

                                                                    
Query: 425 taagtttctgctattcataatgcatttcacaaatgtcctgctctcttgcccttagct 481
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taagtttctgctattcaaaatgcatttcacaaatgtcctgctctcttgcccttagct 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)