Query= MSMg01no417_o19.b1 MSMg01no417_o19.b1 CHROMAT_FILE:
MSMg01no417_o19.b1 PHD_FILE: MSMg01no417_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:58 2005
(559 letters)
>mm_chr3_50107800_50108758
Length = 959
Score = 1054 bits (545), Expect = 0.0
Identities = 555/559 (99%)
Strand = Plus / Plus
Query: 1 aactcacatctganaattgactgtgagtgctcagccctctgttatagtgacctgggtaag 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aactcacatctgaaaattgactgtgagtgctcagccctctgttatagtgacctaggtaag 260
Query: 61 acctatgcttcccacgcgtgaagcattttctataatgcacttcagaaaggactatttact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctatgcttcccacgcgtgaagcattttctataatgcacttcagaaaggactatttact 320
Query: 121 cttgcctctttcagtgaaggaactgatggtgaccaaaatatattcctgcatttcagagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgcctctttcagtgaaggaactgatggtgaccaaaatatattcctgcatttcagagct 380
Query: 181 taaggaagaagggcttggcctgctgctggttctgatgggcatagcaattatattgcttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaggaagaagggcttggcctgctgctggttctgatgggcatagcaattatattgcttgc 440
Query: 241 ctgtaggtggcaccagttggctgctactaccctggaatggtccatcctcaaggccatcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtaggtggcaccagttggctgctactaccctggaatggtccatcctcaaggccatcac 500
Query: 301 agaacgtcaacagaagcatctaccaccaggttaagaagaggagctcaagtcttgttcaaa 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 agaacgtcaacagaagcatctaccaccaggataagaagaggagctcaagtcttgttcaaa 560
Query: 361 actgtgcctctcttgactaatgcgtttcccaggaccttgattaaagacatcctccagccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtgcctctcttgactaatgcgtttcccaggaccttgattaaagacatcctccagccc 620
Query: 421 tcttgggaccaagtaaagggaggacagtttgaatgttattttacctcagaagatgtcctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttgggaccaagtaaagggaggacagtttgaatgttattttacctcagaagatgtcctt 680
Query: 481 ctctaataaactgcatattttgtangacacctagcatctcagctttcttatccaaagcca 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctaataaactgcatattttgtaggacacctagcatctcagctttcttatccaaagcca 740
Query: 541 cgattgaatctagcctcta 559
|||||||||||||||||||
Sbjct: 741 cgattgaatctagcctcta 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_o19.g1 MSMg01no417_o19.g1 CHROMAT_FILE:
MSMg01no417_o19.g1 PHD_FILE: MSMg01no417_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:58 2005
(577 letters)
>mm_chr3_50239269_50240246
Length = 978
Score = 1110 bits (574), Expect = 0.0
Identities = 577/578 (99%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 1 cctgggagagaagaaag-tacaatgtgtgtggttttgactggaggtaggagatcaaggtt 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cctgggagagaagaaagttacaatgtgtgtggttttgactggaggtaggagatcaaggtt 719
Query: 60 ggagtcaggtaatatgggttggtctctggtgatccagggatcaggactaggtgttaacca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggagtcaggtaatatgggttggtctctggtgatccagggatcaggactaggtgttaacca 659
Query: 120 caagaaggaagaaaagctgaaagggactcttgcttgagaggttaggcaattttgtggatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 caagaaggaagaaaagctgaaagggactcttgcttgagaggttaggcaattttgtggatt 599
Query: 180 tccttgtgtgtggcaagaacctgccctcatatttaagatgaaatggaatattcctttttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tccttgtgtgtggcaagaacctgccctcatatttaagatgaaatggaatattcctttttt 539
Query: 240 ccctttgaagaactcaagtagtaggacttattattgtctggattgctatcttcacaggcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ccctttgaagaactcaagtagtaggacttattattgtctggattgctatcttcacaggcc 479
Query: 300 tatttttgtcttcctattctgtggttctctaaataaatatccttaagaaattaagaccac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tatttttgtcttcctattctgtggttctctaaataaatatccttaagaaattaagaccac 419
Query: 360 tcacttggctttgagatttctttttactagaaaattaagaatcaaagttaaacatttaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcacttggctttgagatttctttttactagaaaattaagaatcaaagttaaacatttaga 359
Query: 420 catatgttggcataaacacttataactactaattttcaacaaaggttttctaaaaaccag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 catatgttggcataaacacttataactactaattttcaacaaaggttttctaaaaaccag 299
Query: 480 cccttactagtgtagacaatattgcatttggagtgtatagcaacttaatgaaatatgaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cccttactagtgtagacaatattgcatttggagtgtatagcaacttaatgaaatatgaag 239
Query: 540 ctctaaacatgatagactttcatgttaaatatgttcca 577
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctctaaacatgatagactttcatgttaaatatgttcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
