Query= MSMg01no417_p07.b1 MSMg01no417_p07.b1 CHROMAT_FILE:
MSMg01no417_p07.b1 PHD_FILE: MSMg01no417_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:00 2005
(606 letters)
>mm_chr3_6829339_6830344
Length = 1006
Score = 1100 bits (569), Expect = 0.0
Identities = 594/603 (98%), Gaps = 2/603 (0%)
Strand = Plus / Plus
Query: 6 aattctacctatcctatcaatgtacatactgagacatttgttaaacaaaatagacaatta 65
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 206 aattctacctataatatcaatgtacatactgagacatttgttaaacaaaatagacaatca 265
Query: 66 taacaaaattgttcaatatggataaacaaagccttttagttatgttctacaataacctct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taacaaaattgttcaatatggataaacaaagccttttagttatgttctacaataacctct 325
Query: 126 ttaatggtgaacttgttaatgtatgaccatattcaagaaaatatttaataaaacacacat 185
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttaatggtgaacttgctaatgtatgaccatattcaagaaaatatttaataaaacacacat 385
Query: 186 acattttttccctactctgtgctttaaagcctagtaaaatctcttgcttaaatatgagtg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acattttttccctactctgtgctttaaagcctagtaaaatctcttgcttaaatatgagtg 445
Query: 246 ttccataaggttaccacattgtgaatggtaaataatgtatacacacataaataacttgac 305
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 446 ttccataaggttaccacattgtgaatgggaaataatgtatacacacataaataacttgac 505
Query: 306 tttaaatattttaattaatacaagcatacatacatcaggtataattataatgtatgttaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttaaatattttaattaatacaagcatacatacatcaggtataattataatgtatgttaa 565
Query: 366 tactctataaactgccacgcactctggtcgagtcagcttgacaggccgagaggcttagaa 425
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tactccataaactgccacgcactctggtcgagtcagcttgacaggccgagaggcttagaa 625
Query: 426 gctactcacgaggca--gagtttcacggaaactcacctcctggagtctggcatcctctct 483
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gctactcacgaggcaaagagtttcacggaaactcacctcctggagtctggcatcctctct 685
Query: 484 aacccatacattaatattccattcccacattagtcttgtgtatggaaccacgtgctctct 543
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 686 aacccatacattaatattccattcccgcattagtcttgtgtatggaaccacgtgctctct 745
Query: 544 tttagtattatcctattataagtgccttttaagattgaattatgacatagctaagccttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tttagtattatcctattataagtgccttttaagattgaattatgacatagctaagccttc 805
Query: 604 agc 606
|||
Sbjct: 806 agc 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_p07.g1 MSMg01no417_p07.g1 CHROMAT_FILE:
MSMg01no417_p07.g1 PHD_FILE: MSMg01no417_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:00 2005
(543 letters)
>mm_chr3_7021061_7022003
Length = 943
Score = 922 bits (477), Expect = 0.0
Identities = 514/537 (95%), Gaps = 17/537 (3%)
Strand = Plus / Minus
Query: 5 caagtgaccttctgtgttctttccaggtgaactattctctcagatgggcactctggtgtc 64
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 764 caagtgaccttctgtgttctttc-----------------cagatgggcactctggtgtc 722
Query: 65 agatacctcttaccaatatctcaattgttctttgtttgttgtaggtgaggtccaccttat 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 721 agatacctcttaccaatatctcaactgttctttgtttgttgtaggtgaggtccaccttat 662
Query: 125 ccatttcatctgattagagagtgctgttattcacaatcacccacctagagctgatttaac 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccatttcatctggttagagagtgctgttattcacaatcacccacctagagctgatttaac 602
Query: 185 ttattcaagagtgaaagtattgacctaggttctttacagtgagaaaagaaaggcgtgtct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttattcaagagtgaaagtattgacctaggttctttacagtgagaaaagaaaggcgtgtct 542
Query: 245 ctttgaattcctgctcaggcttacattgctttttcttctactacttgtgtcttaaagctg 304
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctttgaattcttgctcaggcttacattgctttttcttctactacttgtgtcttaaagctg 482
Query: 305 tactgggtatgtcaagcttggtggtaagcacttttacctgctgaatcatctcaacatccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tactgggtatgtcaagcttggtggtaagcacttttacctgctgaatcatctcaacatccc 422
Query: 365 tctatgtatattttctaatattacaactcacatagatccgactgagtctaatgaccaaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctatgtatattttctaatattacaactcacatagatccgactgagtctaatgaccaaat 362
Query: 425 cccattagccatcacgtcacgcagcagtcacatttgtggactcaacagattcaaccatca 484
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cccattagccaccacgtcacgcagcagtcacatttgtggactcaacagattcaaccatca 302
Query: 485 aataaaaaacgagagagtaattatattaaaagtctgattccgaaatctgctttcctg 541
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 aataaaaaatgagagagtaattatattaaaagtctgattctgaaatctgctttcctg 245
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
