Query= MSMg01no417_p10.b1 MSMg01no417_p10.b1 CHROMAT_FILE:
MSMg01no417_p10.b1 PHD_FILE: MSMg01no417_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:01 2005
(588 letters)
>mm_chr3_81706072_81707059
Length = 988
Score = 1069 bits (553), Expect = 0.0
Identities = 577/585 (98%), Gaps = 2/585 (0%)
Strand = Plus / Plus
Query: 5 gaattctttcatttgctttatttgatctatatgaatgttttacctacaat-tatatcttc 63
||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 205 gaattttttcatttgttttatttgatctatatgaatgttttacctaca-tgtatatcttc 263
Query: 64 cttcatgtctggtaggtacaaagatgagaaggggatggtatgttcccttccatttcactt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttcatgtctggtaggtacaaagatgagaaggggatggtatgttcccttccatttcactt 323
Query: 124 tgtactaactaacactggcagaacagattttgaaacatcatacagaactatttaatatat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtactaactaacactggcagaacagattttgaaacatcatacagaactatttaatatat 383
Query: 184 ggaataagtatgtataaatacagacaaactagtttttgaagaggaaaaggaccaagaggg 243
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 ggaataagtatgtataaatacagacaaactagttcgtgaagaggaaaaggaccaagaggg 443
Query: 244 agcctgaatctcaagtgctctaaaacacccaagatcacaggatcataggatcacagagga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcctgaatctcaagtgctctaaaacacccaagatcacaggatcataggatcacagagga 503
Query: 304 agctctagtctcagaatatcagacaaacccaggagcactggagctctgacaaactcaaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agctctagtctcagaatatcagacaaacccaggagcactggagctctgacaaactcaaga 563
Query: 364 tcacagctaaggccacaacatctttcccaacaaccagcctaattgggacccccacaggaa 423
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 564 tcacagctaaggccacaacatctttcccagcaaccagcctaattgggacccccacaggaa 623
Query: 424 ccagggaaacacaaaaccccacccagctaaaagcatgagttctttccatcttgcaccagg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccagggaaacacaaaaccccacccagctaaaagcatgagttctttccatcttgcaccagg 683
Query: 484 gctgtagcaaacccaggactctggctccccacccacccctgcaaaacccagagaaaactt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gctgtagcaaacccaggactctggctccccacccacccctgcaaaacccagagaaaactt 743
Query: 544 gactcccaggagctctgatacaacaggatctcaggagcttgatca 588
|||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 744 gactcccaggagctctaatacaacaggatctcaggagcttgatca 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_p10.g1 MSMg01no417_p10.g1 CHROMAT_FILE:
MSMg01no417_p10.g1 PHD_FILE: MSMg01no417_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:01 2005
(518 letters)
>mm_chr3_81896290_81897207
Length = 918
Score = 920 bits (476), Expect = 0.0
Identities = 502/518 (96%), Gaps = 12/518 (2%)
Strand = Plus / Minus
Query: 1 tgtaaaaggatgtggctttaaaacaagaccagcttcaaagccaagagagattgacacact 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 888 tgtaaaaggatgtggctttaaaacaagaccagcttcaaagccaagagagattgacacagt 829
Query: 61 tgagtatttgaatcagtattagcagaactatagacacgctgactttctatgtgtatattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tgagtatttgaatcagtattagcagaactatagacacgctgactttctatgtgtatattt 769
Query: 121 gaaaagaactttagtttaaaagtccttttctacctccattagtctccaagcatccggggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaaaagaactttagtttaaaagtccttttctacctccattagtctccaag---------- 719
Query: 181 aacagtcatcattacctagctctagtttttccaaggggtacgactaaactattccagtgg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 718 --cagtcatcattacctagctctagtttttccaagggatacgactaaactattccagtgg 661
Query: 241 atttctttaaaggctgtttaaaggctcattaaacagtcgcactgatgttggagagtatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 atttctttaaaggctgtttaaaggctcattaaacagtcgcactgatgttggagagtatca 601
Query: 301 caggccttgcgaaggtctatatatgatgtcacaatgatgtgaagttcaatgaaaatctat 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 600 caggccttgcgaaggtctatttatgatgtcacaatgatgtgaagttcaatgaaaatctat 541
Query: 361 gaagacagtaaagaggtaaataccctctctttctggaactaaaatttaatacaggggaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaagacagtaaagaggtaaataccctctctttctggaactaaaatttaatacaggggaac 481
Query: 421 taataggaatcacagacaattagaaagcacaaaacaagatgtcatcctcttaagctgtgc 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 480 taataggaatcacagacaattagaaagcacaaaacaggatgtcatcctcttaagctgtgc 421
Query: 481 agttaggtagttgctacattagtaataatctgattcag 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agttaggtagttgctacattagtaataatctgattcag 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
