BAC Information

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BAC

Clone NameMSMg01-417P24
Chromosome3 (Build37)
Map Location 138,622,218 - 138,622,697
singlet/doubletsinglet
Overlap geneRap1gds1
Upstream geneDapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771
Downstream geneEG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417P24.T7 (MSMg01no417_p24.b1)MSMg01-417P24.TJ (MSMg01no417_p24.g1)
ACCAG513445AG513446
length780774
length of high quality
(start - end)		472 (47 - 518)395 (79 - 473)
definitionCHROMAT_FILE: MSMg01no417_p24.b1 PHD_FILE: MSMg01no417_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:04 2005CHROMAT_FILE: MSMg01no417_p24.g1 PHD_FILE: MSMg01no417_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAACTAGTGTCCTTTAAGATCAGTTAATAAACAACTTAGAAACA
AAAAACAAAACACCTACTACCACCACCACAAAAACCAAACAAACAGACAA
ACAAACAAACATAAAAACCCTCACCTTTGAACGCTTGAGTTTCAAGATCA
AGATGACAGTCCAGACTAATTATATAAAAACTTCAGTTTTCTATTTGAAA
TTATTTATCCTCTTAAAATGTTCCATAGCCCCCCCAAAAAACCCCAGGTC
CTTTTCAGCTCTGACAACACCCAATATCACTATATTTTTAGGTATTATGA
TTATGGTAAAAGACAACAGTATATTATATACAAATATGTCTATAATACAT
ACATATTGTTATCTAAAGTTAAAATATATCTACTATGAGATTTGAATAAA
AAGCTGTCAAAATTTATGGGACTATTAGAAAATCTGAACCTACACACAAG
TATGCATACTTGGACTGGTATTTGTATAGATGCAATCTTTCTAGTGTGGG
TTGTAAATTTATAAGTTTTGGTTTTAAGAGAGCTTCACGTTTTCACTGAT
GTAAGCCGTCTTTGGGTCATGAGTACCCAGNGAATCCCTAACCCGAATTC
TATTTCCCACGAAGGCTTCAAAAACTTCTTAAAAGCCGGGCGGGGTGGTG
GCCCCCCTCCGAAGGACAAGTAAACCAATTTTCCAGTTTAGGCCGCCCCG
GTTTACAATAGAAGTCTTTAAAAACAAGGT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGTCACCTGCAGCTCAAAG
GTCATCTCTGACATCATATACACACAAGTAACATTATATAGACTGTGTAG
GTGGTATTTTTATACTTATGAATATATATGTACACACACACACACACCTT
AACAATTAAAAAATAAAGTAAAATTTGAGAGAGATGGAGAAGGTGCCTGG
AAGGGGTTGGAGGGACAAAGTGGGGGAAATGATCATACTATATTTTAATT
TCAAAAAACCTTTAGTTAAAAAAGGAGAAATATAAAATCTAAGTGATTAA
GGTGTTTTTGAGGTTTTAAATAACTAGAGGTGGTACCAGAAAGGGAGAGA
GAGAGAGAGAGAGGAGAGAGAGAGAGAGAACAGCTTGCCTCTGTCCCTTG
TTGTAGTCTCATCTGCATGAGAACCAGATACCTGCATGTCTTGGTAGAAA
CCAGAGTTTATTGGGCCTCTCAAGAATAAATCATTTATTCTGATTGAAGC
CAACCCGAAAACTTGCAAGCTATGGGCTGAAATATTCCCAGCGGTTTTAA
AGAAAATACTGGCTTCCTGATTGAAGAAAAAACATGCCCCCTTTCCCTTT
TTATTTTAAAAAGTTATTTTTGAGCCCTTTTGTTAAAAAAGAGGTTTTTA
AAAAACCCTACCTCAGGTCCCCTAATGAGGTCACACCGCTGGGTCTTCCC
ATTTTGTCAAAAAACGGGGAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_p24.b1 MSMg01no417_p24.b1 CHROMAT_FILE:
MSMg01no417_p24.b1 PHD_FILE: MSMg01no417_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:04 2005
         (472 letters)



>mm_chr3_138622026_138622897
          Length = 872

 Score =  785 bits (406), Expect = 0.0
 Identities = 457/480 (95%), Gaps = 12/480 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaactagtgtcctttaagatcagttaataaacaacttagaaacaaaaaacaaaa 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattctaactagtgtattttaagatcagttaataaacaacttagaaacaaaaaacaaaa 252

                                                                       
Query: 65  cacctactaccaccaccac-aaaaac---caaacaaacag--------acaaacaaacaa 112
           ||||||||||||||||||| ||||||   |||||||||||        ||||||||||||
Sbjct: 253 cacctactaccaccaccacaaaaaacaaacaaacaaacagacaaacaaacaaacaaacaa 312

                                                                       
Query: 113 acataaaaaccctcacctttgaacgcttgagtttcaagatcaagatgacagtccagacta 172
           ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 313 acaaaaaaaccctcacctttgaacgcttgagtttcaagatcaagatgacggtccagacta 372

                                                                       
Query: 173 attatataaaaacttcagttttctatttgaaattatttatcctcttaaaatgttccatag 232
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct: 373 attatataaaaacttcatttttctatttgaaattatttatcctcttaaaatgctctatag 432

                                                                       
Query: 233 cccccccaaaaaaccccaggtccttttcagctctgacaacacccaatatcactatatttt 292
           ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccccccccaaaaaccccaggtctttttcagctctgacaacacccaatatcactatatttt 492

                                                                       
Query: 293 taggtattatgattatggtaaaagacaacagtatattatatacaaatatgtctataatac 352
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 493 taggtattatgattatggtaaaagacaacagtatattatatacacatatgtctataatac 552

                                                                       
Query: 353 atacatattgttatctaaagttaaaatatatctactatgagatttgaataaaaagctgtc 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atacatattgttatctaaagttaaaatatatctactatgagatttgaataaaaagctgtc 612

                                                                       
Query: 413 aaaatttatgggactattagaaaatctgaacctacacacaagtatgcatacttggactgg 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 613 aaaatttatgggactattagaaaatctgaacctacacacaagtatgcatacttgggctgg 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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