Query= MSMg01no418_c05.b1 MSMg01no418_c05.b1 CHROMAT_FILE:
MSMg01no418_c05.b1 PHD_FILE: MSMg01no418_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:15 2005
(574 letters)
>mm_chr3_130304770_130305744
Length = 975
Score = 907 bits (469), Expect = 0.0
Identities = 496/509 (97%), Gaps = 7/509 (1%)
Strand = Plus / Minus
Query: 69 tgcataccaccaagttggtgatatcacttccaaatgtgtaggaagtccaaatactcatag 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 tgcataccaccaagttggtgatatcacttccaaatgtgtaggaagtccaaatactcatag 916
Query: 129 cacatccatttaggaaccacatccaggcatgctgtaaattagccatgttgatgaactatt 188
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 cacatccatttaggaaccgcatccaggcatgctgtaaattagccatgttgatgaactatt 856
Query: 189 atacaaatgaaattcatataccccagtgagttttgttactttgaacctcattattcattt 248
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 atgcaaattaaattcatataccccagtgagttttgttactttgaacctcattattcattt 796
Query: 249 actgatttggcttcatgctttttttt-------tctctagtagaggagacaagcatatac 301
| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 795 attgatttggcttcatgcttttttttttttttctctctagtagaggagacaagcatatac 736
Query: 302 tcattaaaaaacctgctatgtgctaagtggtgataagcacaagacatgactgaagcatag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcattaaaaaacctgctatgtgctaagtggtgataagcacaagacatgactgaagcatag 676
Query: 362 ggggatctcatcttggcagcaaggcatgtttagtaagttgatgcacatgttgagtcttag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggggatctcatcttggcagcaaggcatgtttagtaagttgatgcacatgttgagtcttag 616
Query: 422 aagaacagcatgtgttcttcagctgggtcaaggacctgggaatggggactttttcaggct 481
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 615 aagaacagcatgtgttcttcagctgggtcaaggacctgggaatggggacttcttcaggct 556
Query: 482 tgaagagcagttaaagatttgttgagtgggaaaacttttgggtaagagtttttggtctac 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 555 tgaagagcagttaaagatttgttgagtgggaaaacttttgggtaagagtttttggtctgc 496
Query: 542 aagataggatgttctatagacctagtcat 570
|||||||||||||||||||||||||||||
Sbjct: 495 aagataggatgttctatagacctagtcat 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space: 544260
Effective search space used: 544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_c05.g1 MSMg01no418_c05.g1 CHROMAT_FILE:
MSMg01no418_c05.g1 PHD_FILE: MSMg01no418_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:15 2005
(481 letters)
>mm_chr3_130127019_130127899
Length = 881
Score = 876 bits (453), Expect = 0.0
Identities = 474/481 (98%)
Strand = Plus / Plus
Query: 1 tttcagggtaagatattgtactgtgggggcagtatttaactttctattcatatgttttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcagggtaagatattgtactgtgggggcagtatttaactttctattcatatgttttaa 260
Query: 61 attatgtatgaagctccttctaacctaacactttagcaattcccatatttcatagttgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatgtatgaagctccttctaacctaacactttagcaattcccatatttcatagttgtg 320
Query: 121 tttcagtccagcttttcccagattcaaatagtctgatttgggggcagaaggagggcacat 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcagtccagctttttccagattcaaatagtctgatttgggggcagaaggagggcacat 380
Query: 181 acattctctagaaatttgaaaaatgtgtgcatgcctttgtgcacaaggaagtgtagagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattctctagaaatttgaaaaatgtgtgcatgcctttgtgcacaaggaagtgtagagag 440
Query: 241 cccagatttcactcactgctatgtaaacccagcaatgtattatcacctggaaaactcagt 300
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 441 cccagatttcactcactgctatgcaaacccagtaatgtattatcacctggataactcagt 500
Query: 301 actcttgcaaagtatattttattgttattatggaaccttgaggatgataatacaaatctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcttgcaaagtatattttattgttattatggaaccttgaggatgataatacaaatctg 560
Query: 361 aatgctttaagagttcaggagttttaatcaagcatcattggtattgtggtcttaaggact 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 aatgctttaagagttcaggagttttaatcaagcatcattggtattgtggccttaaggact 620
Query: 421 tcactgtattccagatgggttatattattaagagcatacatggtataactatttttttat 480
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 tcactgtactccagatgggttatattattaagagtatacatggtataactatttttttat 680
Query: 481 t 481
|
Sbjct: 681 t 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
