BAC Information

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BAC

Clone NameMSMg01-418C19
Chromosome3 (Build37)
Map Location 129,273,728 - 129,273,979
singlet/doubletsinglet
Overlap geneElovl6
Upstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, LOC100043758
Downstream geneEgf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418C19.T7 (MSMg01no418_c19.b1)MSMg01-418C19.TJ (MSMg01no418_c19.g1)
ACCAG513576AG513577
length787849
length of high quality
(start - end)
253 (70 - 322)214 (57 - 270)
definitionCHROMAT_FILE: MSMg01no418_c19.b1 PHD_FILE: MSMg01no418_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:18 2005CHROMAT_FILE: MSMg01no418_c19.g1 PHD_FILE: MSMg01no418_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGCAAATACCATGGATAAGGTGGGGATGGGGAGGTGGACGGGAG
GAGACAACCTTCTTGTTGGAACAGATCTTTGAGAACTAACTGTTCAGTAG
TCCCATCTGCCTTAGACCCAGGATTTCTCTAGCTCATCCTCCTGCACACT
AAGATTACAGGCCTGTGTACTCACATTCCACTGGAAATTGTTTCTTATAG
GCTAACCTATCTAGTACTAGCCTTTCCTGTGTCAGTCAGTAGTGTCAGCC
ATTTAGAGCTGGATACTTCTCTTGTTAATATTATACCGTATGGCAGATAC
AGCTCCTTTCTCTCACCATAGAATTACTGATGACATGTGATTACGAACTG
CCATAGTTTCTGCAGTCGTTGACTGATGACTAAATGTGTCCCTGGTAGCC
CGTCAGGCAAGTTAACCTCTTTCATCATTGCCCCCATACCGTCTGGCATT
CCCCCGATTCTCTCTGCCTTTTACCATGATAACTATCCTCTTCCCCTCTT
ATCTTTCCCCTTTACTCTCTACGTCTGCGTTCCCCCTTTATTTTTTCCTT
TTTCGTTTTGTTCCCTTTCCTTTTTTTCCTGCTCTTCCACTCCTGCTTTT
GCCCTTTTCCTTTCCCTTTCTTTTTCCCTTTCTTGTTTACCCTATTTCCT
TGGTGCTTTCCTTTTTCGTCTTCCTTCTCTTTCTCTCCCTTCTTTCTCTT
TTGTTTCCCTTCCCTTCCCTTTTCCCCTTTCTTTCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTAAAGTCATTAATTCATCTAAATAGCATTAATTCATGAAAAT
TCACCTTCATGTTGATCTGCAGAAAATTTGTCCAATAGAGTAGTCATACA
GGAAGTAATCACACCCAGCTATAGGCCATGAGGGTCTACTGGTGTCCACT
CACACTAAGCCAAATAAATGAGGACTATTGTTATGTTTTATAGAGCCAGG
TATGGTGAGATATGGGGGTGNNTCANNCTCTCTTTTNCCTTTCCCCCTTT
TTCTTTTTTTTCCTTCTTTCTTTTTCCCTTTTTCTCCTTTTCTTTTTCTC
CTTCTTTCTTTCTTTTGCCCTCCTTTTTCCTCCTCTTCTCTTCCTTTTTC
TCCTTCCGCTCTCCCCCCCTTTTTTTTATTTTTTTCCCTCCTTCCTCCTT
TCCTTTTTTCTTTTTCCTTTTTTTCCTCCCCCCCTCCTTCCCTCCTTCTT
CATTTTCCTCCTTTTTTTCTCCTATTACTACACCTTTCACCTTTCTCCCT
TTTTTTTCTTTTTCTCCTTCTTTTACCTTTTTTTTTATCCTCCCCATCCT
TTTTCTTCTTCATTTACTTCCTTTTCCTCTTTTTACTTTCCCTTTTTTTC
CCTTTTTATTTTCTTTCTATCCACTAATCTCAATCTTTTTACCTCTTACC
CATCCTGTCTTTCTATTCCTCTTCATTATTTCTTCACTACTCACTCCTTT
CCTTCCCTTCTTTTCTAGTATCTTCTTCCCTACGTTTTTTCCTTTCTCGC
CCCTTTCCTTTTTTTTCCTTTTGTTCCTCCCCTTTTTTTCCTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_c19.b1 MSMg01no418_c19.b1 CHROMAT_FILE:
MSMg01no418_c19.b1 PHD_FILE: MSMg01no418_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:18 2005
         (253 letters)



>mm_chr3_129273528_129274180
          Length = 653

 Score =  441 bits (228), Expect = e-128
 Identities = 246/252 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gataaggtggggatggggaggtggacgggaggagacaaccttcttgttggaacagatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 201 gataaggtggggatggggaggtggacgggaggagacaaccttcttgtcgggacagatctt 260

                                                                       
Query: 61  tgagaactaactgttcagtagtcccatctgccttagacccaggatttctctagctcatcc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagaactaactgttcagtagtcccatctgccttagacccaggatttctctagctcatcc 320

                                                                       
Query: 121 tcctgcacactaagattacaggcctgtgtactcacattccactggaaattgtttcttata 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgcacgctaagattacaggcctgtgtactcacattccactggaaattgtttcttata 380

                                                                       
Query: 181 ggctaacctatctagtactagcctttcctgtgtcagtcagtagtgtcagccatttagagc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ggctaacctagctagtactagcctttcctgtgtcagtcagtagtgtcagccatttagagt 440

                       
Query: 241 tggatacttctc 252
           ||||||||||||
Sbjct: 441 tggatacttctc 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)