NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTAGTTACACTCAATTGACTTCAGGACTAAGCAGAATGTGCT
CTTAGTCCAGTGAACGGACGATAAAACCATAAAGAATCATATCACATTCC
CTTAGGTCCCCATTGTAGCCCCTGGCCATCACTGGGAATGTGGATATTTG
TAATTACAACAGGAAGGGAATTTTCCAGTTTTCCTGAATTCAGAGGGGCC
TTTCATGTTTCAAAGAATAGAAACGTTCATCCAAACTTTTCAGACTACTC
ATTATATATAGGTATTGAAAGTCAGAAATTTCTATCAGTTGTGCTGTTTG
GACTTTGATGTAATTAAAAAGCTGTTTTGCATGACAAATTACACTGTTGT
AACATTGTAATTAGGACAGAAAGCAGATACATTGCATTCACATTTACCAA
AAGAGCTACAGAAGATTAATTTCGGTCAATTAAAATTCTAAGTTCATCAT
AATTTATTTTTTTCACTTGATAACAGAATGGAAGAATTCCAATATGTTGG
TGAGATGAGACTTACACACACTAATCTACCATGCTAAACTCATTCAGATT
TACAGACCCAAATGTGTTATAAAACATAATTACTTGAGAGTTAAAATCTT
AAGCAAGACTAATATCCAAATTAAAGTTGCCAAGGAATATACGTAAATAG
ATTATAAAATCCCAGAAAACCCATACCAAAAAGGGTTTTGTCTTTAGTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGGTCTTATCATGTTCCCCATC
ATCCTGAAGCAGCTGGTCTGATAGAAAGATGGAATGGCCTTTTGAAGACA
CAGTTACAGCACCAATTAGGTGGTAACAGCTTGGAAGGCTGGGGCAGAGT
TCTTCAGAAGGCAGTATATGCTTTGAATCAGCATTCGATATATGGTACAG
TTTCGCCCATAGTCAGGATTCATGGGTCCAGGAATCAAGGGGTAGAAAAG
GGAATAGTTCCACTTACTATTTCTTCTAGTGACCCTCTAGGAAAATTTTT
GCTTCCTGTCCCCATAACTCTAGGTTCTGCTGGCCTAGAGGTTTTGGCTC
CAGAGTGGGGAGAGCTCCTTCCAGAAGCTACAGCAAACATTCCATTGAAC
TGGAAGCTCAGACTTCCCCCTGGTCATTTTGGGCTTCTAATGCCATTAAA
CCAACAGGAATCTGGAGCCTAGAGGACAACGTGTGTGCTACAAAGAGCAT
GGCTGGAGAAGTGACCCAAGCCCTTGGAGGAGCCCAGAAGATCATGAGTT
GGATCCCAGATATTGGACGTTGGAGATTGATTTTTGCTTTTGATTGCGAC
TGTGCCCTGTATTTTTCCCTCTTGAAGGAAGAAACTATTTTAGTGGAGCC
CCCAGTTAGAGACTTTTTATTGTCAAAAGACTTTGCAATTTAAAAGAG

Query= MSMg01no418_f12.b1 MSMg01no418_f12.b1 CHROMAT_FILE:
MSMg01no418_f12.b1 PHD_FILE: MSMg01no418_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:31 2005
         (594 letters)



>mm_chr3_112681149_112682143
          Length = 995

 Score = 1118 bits (578), Expect = 0.0
 Identities = 590/594 (99%), Gaps = 1/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattgacttcaggactaagcagaatgtgctcttagtccagtgaacggacgataaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattgacttcaggactaagcagaatgtgctcttagtccagtgaacggacgataaaacca 260

                                                                       
Query: 61  taaagaatcatatcacattcccttaggtccccattgtagcccctggccatcactgggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 taaagaatcatatcacattcccttaggtccccattgtagcccctgtccatcactgggaat 320

                                                                       
Query: 121 gtggatatttgtaattacaacaggaagggaattttccagttttcctgaattcagaggggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggatatttgtaattacaacaggaagggaattttccagttttcctgaattcagaggggc 380

                                                                       
Query: 181 ctttcatgtttcaaagaatagaaacgttcatccaaacttttcagactactcattatatat 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ctttcatgtttcaaagaatagaaacgttcatccaaacttttcagactattcattatatat 440

                                                                       
Query: 241 aggtattgaaagtcagaaatttctatcagttgtgctgtttggactttgatgtaattaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 aggtattgaaagtcagaaatttctatcagttgtgctgtttggactttgatgtaattagaa 500

                                                                       
Query: 301 agctgttttgcatgacaaattacactgttgtaacattgtaattaggacagaaagcagata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctgttttgcatgacaaattacactgttgtaacattgtaattaggacagaaagcagata 560

                                                                       
Query: 361 cattgcattcacatttaccaaaagagctacagaagattaatttcggtcaattaaaattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattgcattcacatttaccaaaagagctacagaagattaatttcggtcaattaaaattct 620

                                                                       
Query: 421 aagttcatcataatttattttttt-cacttgataacagaatggaagaattccaatatgtt 479
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 aagttcatcataatttattttttttcacttgataacagaatggaagaattccaatatgtt 680

                                                                       
Query: 480 ggtgagatgagacttacacacactaatctaccatgctaaactcattcagatttacagacc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtgagatgagacttacacacactaatctaccatgctaaactcattcagatttacagacc 740

                                                                 
Query: 540 caaatgtgttataaaacataattacttgagagttaaaatcttaagcaagactaa 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaatgtgttataaaacataattacttgagagttaaaatcttaagcaagactaa 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 995
Length adjustment: 10
Effective length of query: 584
Effective length of database: 985
Effective search space:   575240
Effective search space used:   575240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)