GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTCTATTACATCATCACTATACTGTTTCATATATTACCCAGT
ACTGAAGCATGAGTTCTAAAGTTTATATTTTATGAACTATGAAAGGGAAA
TAACCCATTTCTGAGGGGAAGTTGTAGGTGGGTATCCCTTATAACATTTA
GTGTCTCTAGTTTTCTGTTCCTAAGACTTTATCTTCCATAATCAAGTGAG
TCTTAACATGATTAGGAAAAGAAACACAGTAGTCACAAGACAGTTTAATC
ACTATACTGTTTATTCCTAGTGTTTATCATATCTAAATCTATATACAAAG
CATTCTAGCCTGGAAATAAGGTGATGCTTCTAAATGTTCCTGGATCCCTC
TCTAACACCTTCCCTGGTTTCATTCTTATCACTAAAAGTTACAAGTGAGA
AACCCAGACTATCGTAGAACAGTACATATCAGAACATATCAGTTGATATG
ACACCACATTATTCTATCATGTCTGCATTTCTTTTCCTTCTATTAAAAAC
ATGCATGGGTAAGCCTGTAATTTCACAGGCTACATTCTCTGGANATGATT
GACATTACAACAGGNATGATTAATAAATCTCACCATAACCAAGTACAATT
CAGGCAACATTTGGAAGCCAAGAGAAACAGTATTGCATTTCTCAGATAAA
CTCTGACATGCTATTATGCTACATCCTCTTGGCAAGAGGCTCT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCACTAAACCTGTCTGTTCCTGGCCTTT
TTTGGTTGGGAAAAGATTAATGAATGCTTCTATAGGGGATATGGGTCAGT
TCAGATGGTTTATCGGATCCTGTTTTTGAACTTTGTCACATTTTATGTGT
CTAGAAAATTGTCCACTTCATCCAGATTCTCTTAGTTGAAAATAACCTTT
TGTAGTAGGATATTGTGATTTTTTTGAATTTCCACAGTTTCTACTGTCAT
GTCTCCCTTTTCATTTCTTATTTTATTAATTTGGATACTGTGTCTGTGCC
CTCTAGTTAGTCTGGCTAAGGATTTATCTATCTTGTTGATTTTCTCAAAG
AACCAGCTTCTGGTTTGGTTGATTCTCCATATAGTTCTTTTTGTTTCGAT
TTGTTTGATTTCAGCCCCAGGTTTGATAATTTCCTACCGTCTACTCCTCT
TGGGTATATTTAATTCTTCTTTTTTTTTTTTTTCTAGAGCTTTCCCGTGT
GTCTGTCATGATGTTTTTTGGAAACTTTCTCCCGATTTCTTTTTTAAGGC
ACTTTAAAGGTCATGATGTTTTCCCCTTTACCAAAATCGTTTTATTGGTG
TCCCCCAAAACTTTTTGTTATTGCGTATTCCAATTAACACCAACATTTTG
AAATGCTCTATACTTTTCACTCTCTTTGTTTATTTTGATAACTAATCCCT
TCTCTTTATTTTTGTTCCCN

Query= MSMg01no418_i18.b1 MSMg01no418_i18.b1 CHROMAT_FILE:
MSMg01no418_i18.b1 PHD_FILE: MSMg01no418_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:46 2005
         (557 letters)



>mm_chr3_48472585_48473542
          Length = 958

 Score = 1027 bits (531), Expect = 0.0
 Identities = 548/554 (98%), Gaps = 1/554 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctcta-ttacatcatcactatactgtttcatatattacccagtactgaagcat 63
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gaattctctctactaaaatcatcactatactgtttcatatattacccagtactgaagcat 699

                                                                       
Query: 64  gagttctaaagtttatattttatgaactatgaaagggaaataacccatttctgaggggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gagttctaaagtttatattttatgaactatgaaagggaaataacccatttctgaggggaa 639

                                                                       
Query: 124 gttgtaggtgggtatcccttataacatttagtgtctctagttttctgttcctaagacttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gttgtaggtgggtatcccttataacatttagtgtctctagttttctgttcctaagacttt 579

                                                                       
Query: 184 atcttccataatcaagtgagtcttaacatgattaggaaaagaaacacagtagtcacaaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atcttccataatcaagtgagtcttaacatgattaggaaaagaaacacagtagtcacaaga 519

                                                                       
Query: 244 cagtttaatcactatactgtttattcctagtgtttatcatatctaaatctatatacaaag 303
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 518 cagtttaatcactatactgtttattcctagtgcatatcatatctaaatctatatacaaag 459

                                                                       
Query: 304 cattctagcctggaaataaggtgatgcttctaaatgttcctggatccctctctaacacct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cattctagcctggaaataaggtgatgcttctaaatgttcctggatccctctctaacacct 399

                                                                       
Query: 364 tccctggtttcattcttatcactaaaagttacaagtgagaaacccagactatcgtagaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tccctggtttcattcttatcactaaaagttacaagtgagaaacccagactatcgtagaac 339

                                                                       
Query: 424 agtacatatcagaacatatcagttgatatgacaccacattattctatcatgtctgcattt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agtacatatcagaacatatcagttgatatgacaccacattattctatcatgtctgcattt 279

                                                                       
Query: 484 cttttccttctattaaaaacatgcatgggtaagcctgtaatttcacaggctacattctct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cttttccttctattaaaaacatgcatgggtaagcctgtaatttcacaggctacattctct 219

                         
Query: 544 gganatgattgaca 557
           ||| ||||||||||
Sbjct: 218 ggaaatgattgaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space:   518556
Effective search space used:   518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)