Query= MSMg01no418_p05.b1 MSMg01no418_p05.b1 CHROMAT_FILE:
MSMg01no418_p05.b1 PHD_FILE: MSMg01no418_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:18 2005
(548 letters)
>mm_chr3_112326540_112327487
Length = 948
Score = 1006 bits (520), Expect = 0.0
Identities = 538/544 (98%)
Strand = Plus / Minus
Query: 5 gaattctgtcctgtgccaagcttttattgcacatggtggaacacagaaagtttgggccat 64
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 748 gaattctgtcctgtgccaagcttttattgcacatggcagaacacagaaagtttgggccat 689
Query: 65 caaacattccttcataaaataagcaatctcatttaagaacataggcttttaaactgagca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 caaacattccttcataaaataagcaatctcatttaagaacataggcttttaaactgagca 629
Query: 125 tatgagaaattgtgaagtgagggttattaatgcagaatcaaattacttcagagcaggcaa 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tatgagaaattgagaagtgagggttattaatgcagaatcaaattacttcagagcaggcaa 569
Query: 185 aatggtggatgctcataatagattcttctagtcatatgtcatctgaaaagctcatatttt 244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 568 aatggtggatgctcataatagattcttctagccatatgtcatctgaaaagctcatatttt 509
Query: 245 ctagaattgaagggaaagtgggttggagtaaagaccaggaaaggagttttcatttttaat 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 508 ctagaattgaagggaaagtgggttggaggaaagaccaggaaaggagttttcatttttaat 449
Query: 305 ccaggattaattccattatatagtgaaggtgaatattgaagcacatagtggatattgatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccaggattaattccattatatagtgaaggtgaatattgaagcacatagtggatattgatt 389
Query: 365 cataaccccatttaatatgatatggcacacatgtttaaaagcaatttattttagctgctc 424
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 388 cataaccccatttaatatgatacggcacacatgtttaaaagcaatttattttagctgctc 329
Query: 425 cccaaagctgcctgaaatcctattaagaaaggaccctctgaagaaatacatcttacttgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cccaaagctgcctgaaatcctattaagaaaggaccctctgaagaaatacatcttacttgt 269
Query: 485 tgtacagggtttacaaatacaggtatcggagtaatcctggcttaacaacaaatgctatct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgtacagggtttacaaatacaggtatcggagtaatcctggcttaacaacaaatgctatct 209
Query: 545 gtaa 548
||||
Sbjct: 208 gtaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_p05.g1 MSMg01no418_p05.g1 CHROMAT_FILE:
MSMg01no418_p05.g1 PHD_FILE: MSMg01no418_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:18 2005
(538 letters)
>mm_chr3_112165923_112166860
Length = 938
Score = 948 bits (490), Expect = 0.0
Identities = 522/538 (97%), Gaps = 10/538 (1%)
Strand = Plus / Plus
Query: 1 ctctgtgcttattgtagtttttaacatacttttacttacacattatgtccttaacttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgtgcttattgtagtttttaacatacttttacttacacattatgtccttaacttcaa 260
Query: 61 ctgtcttctctttgctactatgagtttaaataatagctttcttaagtgaggcagttataa 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 261 ctgtcttctctttgctactatgagtttaaataatagctttcttaagtgaagcagctataa 320
Query: 121 agaaagccattaatcaagagtgatagacactaattgtgtgatcatcagaagctggcaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaagccattaatcaagagtgatagacactaattgtgtgatcatcagaagctggcaatg 380
Query: 181 gagagtgactgccctaaagtataaagtaagtagaaagaaatagtgagaaatgtaacatcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagtgactgccctaaagtataaagtaagtagaaagaaatagtgagaaatgtaacatcg 440
Query: 241 aaatttattaataaaacatgaaagaggaacgattaatagagactataaagacaagagaaa 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatttaaaaataaaacatgaaagaggaacgattaatagagactataaagacaagagaaa 500
Query: 301 aatcaaatggctgaacataatgaaacaacttaatgagccgggaacagaacgcttgtgatg 360
|||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 501 aatcaaatggctgaac---------ca-cttaatgagccgggaacagaatgcttgtgatg 550
Query: 361 gtccacaagcaggaaacatacacccgagcatccctacaactgctgtgttacccatccttc 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 551 gtccacaagcaggaaacatacacccgagcatccctacaattgctgtgttacccatccttc 610
Query: 421 ggtccattttattttaactatacaagtactgatctatagttgtaaaatagatcaggaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ggtccattttattttaactatacaagtactgatctatagttgtaaaatagatcaggaagt 670
Query: 481 tctgaaagtgttttatcaaccttcaaattaatccaaggaagcatttaaatttgctgtt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tctgaaagtgttttatcaaccttcaaattaatccaaggaagcatttaaatttgctgtt 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
