BAC Information

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BAC

Clone NameMSMg01-419E17
Chromosome3 (Build37)
Map Location 158,004,580 - 158,005,076
singlet/doubletsinglet
Overlap geneLrrc7
Upstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419E17.T7 (MSMg01no419_e17.b1)MSMg01-419E17.TJ (MSMg01no419_e17.g1)
ACCAG514430AG514431
length740778
length of high quality
(start - end)
289 (253 - 541)497 (64 - 560)
definitionCHROMAT_FILE: MSMg01no419_e17.b1 PHD_FILE: MSMg01no419_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:46 2005CHROMAT_FILE: MSMg01no419_e17.g1 PHD_FILE: MSMg01no419_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATATTTGTGGCGCGATAGACACTCTTTCCTCAGAGGAGCGNAGA
AAACACTTTACTCCGTAGAGCGTCTCTTCTCCCCACACCATTATTGTGTC
TCTTTTGAGAGAGTGTATATATCCCGTGCTCTCTAACTCTGTTTTAAGAC
TTTGCCAAAGTGCTCTTTGCTCCCTTGTCTCTGTACTCAAATAATATACC
AAGATGCCTGGAGAAGGTCTCTTTTTACTGAAGATGGTTTAGGCTGCTTG
GGGTCTTTTAAGCTTACCTAGGAATTTTAGAAGATTTTTCTGTGAAGAAT
ATCCTTGGAATTTTTATGGGAATTGTGTGGAATCTGTAAAAAAAAATGGT
AGTATAGCTACATAATTTACTATATTAATTCTACAAATCCAAAACCATGA
GAGGTCTTTCCATCTTCTGGTGTCTTCTTATGTTTTTTTCTTAGGTGCTT
TAAAACTGTAAAGGTCTTTCCCGCGCTTGGTTAGGTTTATTTCTAGGTGT
TTTTGAAGCTATGTGAATAATATTGATATTTCTATTCATTTCTCAGTGTG
GTCATTGTTGGTATATAGAGAAACTTCTAATTTTTATGGCAAATTGTTTC
CCGGAACTTTTGGAAGCGTTTGCCAGAACAAACTTTTTTTGGTTTTACCA
CCTCCTGGCCCGGATCATATTCTGGGGATTCCGGGAATTTTGATCTTTAA
ATTCCCAATTATAACCTCCCCTTTCCTTTTCCTTCACCCC
NGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTACCTTTTACAGTAAAATACATTTTGTGAGACTAG
GAACTTTGTCCAATAATGAACCCTGGTAGCTGAAATAGCATCTACAGAAA
ACATGCAGAATAAACAAGTATGCCAATTTGTACACTTAATCTAAAATCTA
GGAGCTTATGTATGCTCCCGAATGGGAGCAGAGATTAGAGAATGGAACTT
TAAAATGCTTCTACCGGATTTACTATTCATGTACAATTGAGAAACACAAA
AGAACCAGGTCCTCACATGAAAGATGAAAAAATATCTAGAAAATGCATGA
AATAAACAGAGAACCATTGCTTATTGATTCTGATGTTTAAGAGTAACAGC
CATATTAAATTTTATGTGTGAAGCATTTTAAGTAACAATAGAGGTCTGAG
TGAGAAAAGAAATCTGATATCCTCTTTACAAGAGCAGTTTATGTTAATTT
GTCTTCCATTTTCCTCTGCTATACACTTGCAGACTTCACCTAAGTTTTCA
GTTACTTTAAAAATAAATTTGTTCACATGAATGACAAAATAATTAGAAGG
CATCTAAGTATGATACTCTAAGAAAGAGATTAAACAGNCAATTCTTGTTA
CATCTTTATTACTTAGACACATAAATGGGGGGAGTTTACTCCTAAAAAGG
GGTTATATAATCCGAAAAAACTATTTACGGGAAGGCCGAAAAATCGGGCC
CCCAAATTTGGAGGGAAGTTAAAAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_e17.g1 MSMg01no419_e17.g1 CHROMAT_FILE:
MSMg01no419_e17.g1 PHD_FILE: MSMg01no419_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:46 2005
         (497 letters)



>mm_chr3_158004380_158005276
          Length = 897

 Score =  953 bits (493), Expect = 0.0
 Identities = 496/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaccttttacagtaaaatacattttgtgagactaggaactttgtccaataatgaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaccttttacagtaaaatacattttgtgagactaggaactttgtccaataatgaaccc 260

                                                                       
Query: 61  tggtagctgaaatagcatctacagaaaacatgcagaataaacaagtatgccaatttgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtagctgaaatagcatctacagaaaacatgcagaataaacaagtatgccaatttgtac 320

                                                                       
Query: 121 acttaatctaaaatctaggagcttatgtatgctcccgaatgggagcagagattagagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttaatctaaaatctaggagcttatgtatgctcccgaatgggagcagagattagagaat 380

                                                                       
Query: 181 ggaactttaaaatgcttctaccggatttactattcatgtacaattgagaaacacaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ggaactttaaaatgcttctaccggatttactattcatgtacgattgagaaacacaaaaga 440

                                                                       
Query: 241 accaggtcctcacatgaaagatgaaaaaatatctagaaaatgcatgaaataaacagagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaggtcctcacatgaaagatgaaaaaatatctagaaaatgcatgaaataaacagagaa 500

                                                                       
Query: 301 ccattgcttattgattctgatgtttaagagtaacagccatattaaattttatgtgtgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccattgcttattgattctgatgtttaagagtaacagccatattaaattttatgtgtgaag 560

                                                                       
Query: 361 cattttaagtaacaatagaggtctgagtgagaaaagaaatctgatatcctctttacaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattttaagtaacaatagaggtctgagtgagaaaagaaatctgatatcctctttacaaga 620

                                                                       
Query: 421 gcagtttatgttaatttgtcttccattttcctctgctatacacttgcagacttcacctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagtttatgttaatttgtcttccattttcctctgctatacacttgcagacttcacctaa 680

                            
Query: 481 gttttcagttactttaa 497
           |||||||||||||||||
Sbjct: 681 gttttcagttactttaa 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)