Query= MSMg01no419_h14.b1 MSMg01no419_h14.b1 CHROMAT_FILE:
MSMg01no419_h14.b1 PHD_FILE: MSMg01no419_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:02 2005
(274 letters)
>mm_chr3_40660574_40661247
Length = 674
Score = 513 bits (265), Expect = e-150
Identities = 273/277 (98%), Gaps = 3/277 (1%)
Strand = Plus / Minus
Query: 1 gcaatctaagctactatcaagcattcagagtggtttgatatcacatttcactatgtgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gcaatctaagctactatcaagcattcagagtggtttgatatcacatttcactatgtgata 300
Query: 61 tgctgatgcattatgtaaggacaaagggggatttttttctgtagtaaaaacaattcgtag 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 299 tgctgatgcattatgtaaggacaaggggggatttttttctgtagtaaaaacaattcgtag 240
Query: 121 gtacctgtactaacatatgtttaaaatcaattcaattttgaagctgaggcaggaggccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gtacctgtactaacatatgtttaaaatcaattcaattttgaagctgaggcaggaggccca 180
Query: 181 tgagttcaaagctagcttgggttgcatagcaagacatgtctcaacaacaacaacaacaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tgagttcaaagctagcttgggttgcatagcaagacatgtctcaacaacaacaacaacaac 120
Query: 241 aa---aaaaccccaaaacaaacaataataaaaaaggc 274
|| ||||||||||||||||||||||||||||||||
Sbjct: 119 aacaaaaaaccccaaaacaaacaataataaaaaaggc 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no419_h14.g1 MSMg01no419_h14.g1 CHROMAT_FILE:
MSMg01no419_h14.g1 PHD_FILE: MSMg01no419_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:02 2005
(245 letters)
>mm_chr3_40521731_40522375
Length = 645
Score = 466 bits (241), Expect = e-136
Identities = 244/245 (99%)
Strand = Plus / Plus
Query: 1 ttatgttaaataacaaaacaagtcttaaggagactgaaatattaaatacctttgctgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatgttaaataacaaaacaagtcttaaggagactgaaatattaaatacctttgctgact 260
Query: 61 agaatggaatggcttaaacataagaggatgaaagtgcaatattgtaaaatcttaaattag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatggaatggcttaaacataagaggatgaaagtgcaatattgtaaaatcttaaattag 320
Query: 121 taacataattgaaacttctattgactgttagccttccttgggttgtttagtttcatgttt 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 taacataattgaaacttctattgactattagccttccttgggttgtttagtttcatgttt 380
Query: 181 aatgtagtgttggatgagtagttatataaattcagggtcactattctgcctgagcagtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtagtgttggatgagtagttatataaattcagggtcactattctgcctgagcagtct 440
Query: 241 gcctc 245
|||||
Sbjct: 441 gcctc 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
