Query= MSMg01no419_n23.b1 MSMg01no419_n23.b1 CHROMAT_FILE:
MSMg01no419_n23.b1 PHD_FILE: MSMg01no419_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:32 2005
(334 letters)
>mm_chr3_41411224_41411956
Length = 733
Score = 592 bits (306), Expect = e-173
Identities = 323/334 (96%), Gaps = 10/334 (2%)
Strand = Plus / Minus
Query: 1 cccagagagcttggccactcaattcaccttccctcagcggctagcagcaggcccccaaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cccagagagcttggccactcaattcaccttccctcagcggctagcagcaggcccccaaa- 534
Query: 61 ctaccatgcctcaccgtctgacatcaggctaaacccaagtcaactttccccttaaagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 --------cctcaccgtctgacatcaggctaaacccaagtcaactttccccttaaagcaa 482
Query: 121 gttcacaaacagaaaccatgaccgccccccgcccccactccagtttgcacttagttttcc 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 481 gttcacaaacagaaaccatgaccg-cccccgcccccactccagtttgcacttagttttcc 423
Query: 181 agaatgttactgttgcatcctgagagcagcagcagaacaggcaggagaccttgcagtgtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 422 agaatgttactgttgcatcctgagagcagcagcagaacaggcaggagaccttgcagtggg 363
Query: 241 tttcctgagccctacgcagtgcctgccacattgaagcctcgcgtgcacttttgtttagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tttcctgagccctacgcagtgcctgccacattgaagcctcgcgtgcacttttgtttagtc 303
Query: 301 aacaactgaggtcgcactgagttttcaaaaagtt 334
||||||||||||||||||||||||||||||||||
Sbjct: 302 aacaactgaggtcgcactgagttttcaaaaagtt 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 733
Length adjustment: 9
Effective length of query: 325
Effective length of database: 724
Effective search space: 235300
Effective search space used: 235300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_n23.g1 MSMg01no419_n23.g1 CHROMAT_FILE:
MSMg01no419_n23.g1 PHD_FILE: MSMg01no419_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:32 2005
(450 letters)
>mm_chr3_41258497_41259342
Length = 846
Score = 746 bits (386), Expect = 0.0
Identities = 434/450 (96%), Gaps = 4/450 (0%)
Strand = Plus / Plus
Query: 1 ttgccaggctaggggcagtcagtcaatttcagtccaggggaagaaagtgccacaccattc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ttgccaggctaggggcagtcagtcaatttcagtccaggg-aagaaagtgccacaccattc 259
Query: 61 aaagagagaaaccccaaccaaaggtgtgtgatgcataggtgattaggagggtgcaaaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaagagagaaaccccaaccaaaggtgtgtgatgcataggtgattaggagggtgcaaaggg 319
Query: 121 acaccagagccgcacacatgatcatgggtggaagctgctatcccagaaaatgcctgggag 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acaccagggccgcacacatgatcatgggtggaagctgctatcccagaaaatgcctgggag 379
Query: 181 tggagctacagacaccagtagctattgaccggatggaggagggggaactttagcatctaa 240
||||||||||||||||| | | |||||||||||||||||||||||| |||||||||||||
Sbjct: 380 tggagctacagacaccaatgggtattgaccggatggaggaggggga-ctttagcatctaa 438
Query: 241 ggtactttcaccactagaaatgacattgagctgagactgagtctcaagggaactccacag 300
||||||||||||| | | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggtactttcacca-tgggaatggcattgagctgagactgagtctcaagggaactccacag 497
Query: 301 ctctcctgaatctgccttggcacccaaacaagctcatccattgccaatagcagaacatgt 360
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 498 ctctcctgaatctgccttggcactcaagcaagctcatccattgcca-tagcagaacatgt 556
Query: 361 gtgaaggcctcagagcacaggggacaatgatgagagatttcaaggagcagcaggtagctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtgaaggcctcagagcacaggggacaatgatgagagatttcaaggagcagcaggtagctg 616
Query: 421 ggccacttgccagttaggcttcgggtaccc 450
|||||||||||||||| ||| ||||||||
Sbjct: 617 ggccacttgccagttaagctgagggtaccc 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 846
Length adjustment: 10
Effective length of query: 440
Effective length of database: 836
Effective search space: 367840
Effective search space used: 367840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
