BAC Information

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BAC

Clone NameMSMg01-419O05
Chromosome3 (Build37)
Map Location 133,984,994 - 133,985,274
singlet/doubletsinglet
Overlap genenone
Upstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4
Downstream genePpia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419O05.T7 (MSMg01no419_o05.b1)MSMg01-419O05.TJ (MSMg01no419_o05.g1)
ACCAG514883AG514884
length765752
length of high quality
(start - end)
281 (232 - 512)448 (72 - 519)
definitionCHROMAT_FILE: MSMg01no419_o05.b1 PHD_FILE: MSMg01no419_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:33 2005CHROMAT_FILE: MSMg01no419_o05.g1 PHD_FILE: MSMg01no419_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCCCGTCCAATAATCGCGGCTGCGCATAAGAGGCATTTTTCTTCCCAGA
AAGCGCGGGAAANCNNTTTTTTCCCCCAAAGACAAGGCNNATCCCNANCC
GACATATATTTTCCCCAGAAAGGCTTTCCGCGTTGTGAATTCTAACTTTA
ATAACCTAAGAATAACTTTCACAGAAGAAAAGGTTTAACCAGGGAGCCGC
TGGGGAAGGAAGAAGGCATGGGTGGTGGAATATGAGAATTCAACCAACTC
AGTGCTACTAAGATGCGCTCCAGGGCTTTTCTGTAGATGTTTAGCAATTT
CCTTCTTGCTTATGGTACTGCTACTCTCTTTGAGATGGGTTTTATGCAAG
CTGTGAGATCTGAGTTTACATTCATGCTCCTGCAAGCTCATATCAAATCC
TGATAGTTTTATTGATGAGTGTGTCTACTCTTTTGGAAATCCCTTTTCTG
TATTAAAATAAGCTTATATGAGGGTCAGTTTCTGAGTCCTCTACTCTGAT
TCTATTGATTGTTTTCATCAATACTACATTATCTTTTTGGAGAAAGGTCG
CTTCCTTGCTGCTTTGGTTTGCCCCTCCGATAACAAAATTCCCCCGTGAC
AAGTTTGCCTTTGGAATTCTATGTACCCTCAGCCCGCTCCCCAATTTTTT
TCGCTACCTCCCCCGCGATTGGCACACCGCCCTTTCCCCCCTTTTCACCT
TGTTCCCCGTGTTGGGTTTTACCCCCACACCTTATTTACCCCCCTTTTTT
TTCTTCTTCCCTCCC
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAAT
GGGGTTATTTGATTTTTCTGGAGTACAGCTTCTTAAGTTGTTTGTATATA
TTGGATATTAGCCCCCTATCAGATTTAGGATTGGTAAAGATCCTTTCCCA
ATCTGTTGGTGGCCTTTTTGTCTTATTGACATTGTCTTTTGCCTTACAGA
AGCTTTGCAATTTTAAGAGGTCTCTTATGTATCCAATCTGTTAGTCTATG
TCTTTTTATTGGGGAATTTAGTCCATTGATGTTAAGAAATACAATTCTTG
CTTCCTGTTACTATTGATGTTATCTTTATGTTTGTGTGGTTATCTTATAT
TGGGTTTGTTGAAAGAAGAGTACTTTCTTGCTTTTTTTTAGGGTGTAGTT
TCCCTCCTTTTGTTTGCATTTTCCATTTATTATCTTTTGTAGGGCTGGAT
TTGTGGAAAGATATTGTGTATATTTTGGTTTTGTCATGGAATATCTTGTT
TTCCCCAATTACGGTATTTGANATTTTTACTGTGTATTGCAATTTGGGCT
AGCTTTTTGTGTTCCTCCCAAGGTTTGGTATAAATTTTGCCCCGTAAACT
TCTAGCTTTTCTTATCCTCGGGTAAAATAAATTGTGTATTTCTTAATTAA
ACTCCTCTTAGATTGTTCATCGTGTCCCCTTCCTTTCACGACTTTCTTTA
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_o05.b1 MSMg01no419_o05.b1 CHROMAT_FILE:
MSMg01no419_o05.b1 PHD_FILE: MSMg01no419_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:33 2005
         (281 letters)



>mm_chr3_133984794_133985474
          Length = 681

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagaattcaaccaactcagtgctactaagatgcgctccagggcttttctgtagatgtt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 481 atgagaattcaaccaactcagtgctactaagatgcactccagggcttttctgtagatgtt 422

                                                                       
Query: 61  tagcaatttccttcttgcttatggtactgctactctctttgagatgggttttatgcaagc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 421 tagcaatttccttcttgcttatggtactgctactcgctttgagatgggttttatgcaagc 362

                                                                       
Query: 121 tgtgagatctgagtttacattcatgctcctgcaagctcatatcaaatcctgatagtttta 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 361 tgtgagatctgagtttacattcatgctcctgcaagctcctatcaaatcctgatagtttta 302

                                                                       
Query: 181 ttgatgagtgtgtctactcttttggaaatcccttttctgtattaaaataagcttatatga 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 ttgatgagtgtgtctactcttttggaaatcccttttctgtataaaaataagcttatatga 242

                                                    
Query: 241 gggtcagtttctgagtcctctactctgattctattgattgt 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggtcagtttctgagtcctctactctgattctattgattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)