Query= MSMg01no420_b05.b1 MSMg01no420_b05.b1 CHROMAT_FILE:
MSMg01no420_b05.b1 PHD_FILE: MSMg01no420_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:48 2005
(497 letters)
>mm_chr3_150936423_150937319
Length = 897
Score = 938 bits (485), Expect = 0.0
Identities = 494/497 (99%)
Strand = Plus / Plus
Query: 1 agttacttcctaagcacagaacatgtttcccatattttaagttagcaggtcaatcagcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttacttcctaagcacagaacatgtttcccatattttaagttagcaggtcaatcagcga 260
Query: 61 aacactgagccagaaaaaagaaacgcatcctctacctattagagcataaagcaaacattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacactgagccagaaaaaagaaacgcatcctctacctattagagcataaagcaaacattg 320
Query: 121 taagatccactaaacgtccttacactaaatctagttgctattgttcattgatgttactat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagatccactaaacgtccttacactaaatctagttgctattgttcattgatgttactat 380
Query: 181 tctgacacttaacatggggctgatatttctgttcaaaaagtagcagcctgataatctggt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tctgacacttaacatggggctgatatttctgttcaaaaagtagcagcctggtaatctggt 440
Query: 241 agattttatatatattatatattttatatatctctctccacacctagcccagggtgccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agattttatatatattatatattttatatatctctctccacacctagcccagggtgccta 500
Query: 301 ttcagtgtgctgagttagtagtggatgactgataaattcgaccctgagatttgataaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcagtgtgctgagttagtagtggatgactgataaattcgaccctgagatttgataaaat 560
Query: 361 tccctatttgattccctatttgcatgtttgtcttttgtccaaacttcaggaagtaactca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccctatttgattccctatttgcatgtttgtcttttgtccaaacttcaggaagtaactca 620
Query: 421 agttcacctcaaagtcacctcctccacagaaagtgtttctcatttccacaaagcaacgat 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttcacctcaaagttacctcctccacagaaagtgtttctcatttccacaaagcaacgat 680
Query: 481 aatataccaaaatgcct 497
|| ||||||||||||||
Sbjct: 681 aacataccaaaatgcct 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no420_b05.g1 MSMg01no420_b05.g1 CHROMAT_FILE:
MSMg01no420_b05.g1 PHD_FILE: MSMg01no420_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:48 2005
(477 letters)
>mm_chr3_151061530_151062406
Length = 877
Score = 830 bits (429), Expect = 0.0
Identities = 457/469 (97%), Gaps = 5/469 (1%)
Strand = Plus / Minus
Query: 1 tgaattttctgttaacccttcagccttcacccagtgattatgtgctgtcgtgtaggtgtt 60
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 464 tgaattttctgttaacccttcagccctcacccagtgattatgtggtgtcgtgtaggtgtt 405
Query: 61 gctttattgcaaaatggaaatggaaaatttgctaagaggaaagcctccccgttatccttt 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gctttattgcgaaatggaaatggaaaatttgctaagaggaaagcctccccgttatccttt 345
Query: 121 atgttgtgcaaatatgtaacccaattcttaaagaaaaaaataaagacacgtggaccatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atgttgtgcaaatatgtaacccaattcttaaagaaaaaaataaagacacgtggaccatga 285
Query: 181 cgaagataagctactaagcgttaaaaaactgcacgatctttcccagaagaatcaaaaatg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgaagataagctactaagcgttaaaaaactgcacgatctttcccagaagaatcaaaaatg 225
Query: 241 gtggagttgggaagctggacagttttttgtttgtctgtttgttttgttttgttttgtttt 300
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 224 gtggagttgggaagctggacagtttttggtttgtctgtttgttttgttttgttttgattt 165
Query: 301 gttttgttttgttttgttttgttttgttttgtattttgaggcagggtttctctgtgtagc 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 164 gttttgttttgttttgttttgttttgt-----attttgaggcagggtttctctgtgtagc 110
Query: 361 cctggctgtcctggaactcactctgtagaccaggctggcctcaaattcagaaatctgcct 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 109 cctggctgtcctggaactcactctgtagaccaagctggcctcaaattcagaaatctgcct 50
Query: 421 gcctctggctcccaagtgctgggattaaaggcgtgtgccaccattgccc 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 gcctctggctcccaagtgctgggattaaaggcgtgtgccaccattgccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
