BAC Information

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BAC

Clone NameMSMg01-420C04
Chromosome3 (Build37)
Map Location 54,689,999 - 54,690,098
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524
Downstream gene6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420C04.T7 (MSMg01no420_c04.b1)MSMg01-420C04.TJ (MSMg01no420_c04.g1)
ACCAG515072AG515073
length728722
length of high quality
(start - end)
100 (138 - 237)193 (123 - 315)
definitionCHROMAT_FILE: MSMg01no420_c04.b1 PHD_FILE: MSMg01no420_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:52 2005CHROMAT_FILE: MSMg01no420_c04.g1 PHD_FILE: MSMg01no420_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGAATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCACCAAGA
GCCGNNGGAGATCCCTTTTTTACCCCCTACTTATATACTGGAGTTTTTAA
AAATAAAATATTCACTCATCAACTCTTTTCTCTTCTGGGTTTGAAGTGAT
CATGGGATATCTCACACATCCTTCATTCCAGTATCTCTTCTGACCTCCAT
ATTATAATACCCAGCTAACTGGGCCTCTTCTCAGGAGCGACTTACAAGAA
TCTCTTAACTGAGTTTGCTGAATCCATCATGTCCCACAAGGAAGACTTCC
AATCTTTCCATCTGGTTTCCCTCTGTTCTTTTTTTCTCACATCCTCAAAC
TGACGCTCACATTACTTTGTAGCGATTTATAGTTATGCAACCTTGGTGGG
GGCCCTCCGAACCTGTCCTCCCCTTATACACACAGTTGATGGTTCGTTCC
ACCTACCCATGTGAGGTTACTGTGAAGTCTAACCGGAATCACATGTGATG
TCTGGTATTCACCACACACCTGGAATGCTAGCTTCCCCTTTTTTATCTTT
CTCTTCCCTCTCTCAGGAATAAATCTGTTCCTAGGCATGGTATGCCATAA
CGCATTGATTTAAACCTTGAAAAACATGAGCCTTCAACATGGGCTAACGA
ATCACTTTCATCTATTGTTCCCCGCCTGCTTGAGGTTCGTTTAACCATCT
GCCGTATTTGTAACGCCTCTTTTCTTTT
TTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTACGAAAAATTCTTTGCTAAAACTATCTAGCCCTGGGTAT
TTTTCAGTTGGGATATTTTTAATGACTGCCTCTATTTTACTAAGGGTTAT
AGGTCTATTTAGATTACTTATCTGATCTTGATTTAACTGTGGTGAGTGAT
ACCTATCAAGACCATTTTTTTTCCAGGTTTTCCAATTTGGTAGAAGTACA
TTTTTTTGAAGTATTTCCTTATGATTATATTTCCTCTATGTCTGTCCTGT
TTCCCTTTCAATTCTGAGNGTGNNTTTTTGCACATCCTCTATCTTTGTGT
GTCTTTTAGTTTATTTGGATAAGGTTTGTCGATCTTATTGCTTTTCTCAC
AGATTCCACTCTTTGCTTTTTGGATTCTTTGTATCTTTTTTTGTTGTCGC
TGCTCCTATTTTATTGATCTTAGCCCTGAGTTTGATAATTTTTTGCCATC
TACTTCTTTGGAGTGTGATTTCATTTTTTTTTTCTTCAAGAGCTTTCATG
TGATCTGTGGAATGCTAATTCTATATATATCTCTCCCGTTTTTTTACATA
AGCACTTTATTGTTTTGATCTTGCCTCTGACAATGCCTATTCTGTGTCCC
CTATATTCGTCTATGTCGCGCGCTTTAATTTTCCATTTTATCCATGCCTT
AATTTCCCTCTTGTCCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_c04.b1 MSMg01no420_c04.b1 CHROMAT_FILE:
MSMg01no420_c04.b1 PHD_FILE: MSMg01no420_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:52 2005
         (100 letters)



>mm_chr3_54689799_54690298
          Length = 500

 Score =  155 bits (80), Expect = 8e-43
 Identities = 95/100 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtttgaagtgatcatgggatatctcacacatccttcattccagtatctcttctgacctc 60
           ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||
Sbjct: 201 ggtttgaagtgatcatgggatatctcacacaaccttcagcccagtatctcttctgacctc 260

                                                   
Query: 61  catattataatacccagctaactgggcctcttctcaggag 100
           || | |||||||||||||||||||||||||||||||||||
Sbjct: 261 cagactataatacccagctaactgggcctcttctcaggag 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space:    45264
Effective search space used:    45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)