BAC Information

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BAC

Clone NameMSMg01-420I06
Chromosome3 (Build37)
Map Location 61,508,821 - 61,670,067
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420I06.T7 (MSMg01no420_i06.b1)MSMg01-420I06.TJ (MSMg01no420_i06.g1)
ACCAG515363AG515364
length714734
length of high quality
(start - end)
177 (77 - 253)301 (321 - 621)
definitionCHROMAT_FILE: MSMg01no420_i06.b1 PHD_FILE: MSMg01no420_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:23 2005CHROMAT_FILE: MSMg01no420_i06.g1 PHD_FILE: MSMg01no420_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,508,821 - 61,508,994)(61,669,768 - 61,670,067)
sequence
TGAGATCGAAAATTGCGGGCGCTGAAGGAATCACTATTTTCAGAGAATCC
GCGGAATTCACTCCTTTTCCAGACATCTGACTTCTACAAATGTGCCCTGG
CATGTGTGTACTGCACATGAGTGTGTTTGTGTACACACACTTATGTAATA
AATACTTTTAAAAATGGTTTTAAAATTTACTTTGTATTTAGCTTAAATTA
AGAAATATTTCAAACATAATATTATGAAATATGCTAGACTAGTAACATGC
GCACCTTTTCTGATAGAGATTAACATTTTAATATATTTTTTCTTCTGCTA
CACTATGAGATGAATCCCTTATATCTTTCACACTCATAGTAATTAATTTT
TAACTGGACGCACGCAAGTTTGGTATGTATAACTTTAGAAGAGTAATGGT
CTCTTGATGGATTGAACAAAAAGAAGTGACAGTCTTTATCTGGTTAGCTT
AGAAGTTTATTTTATTATAGATTACAATAATGAGATCTAATTATTTCCTG
GTCTCATTTGGTTGGAATTATTTCATCCATCCTTTTACGCTAAGATGCCG
TTTATTCATCATTATAAGTAATGTGTATTTCTTATAGACAGCACAAAGAT
GGATCTTATTTTCTAATCCCAGTACTTAACCAGCGTATTCTGCCCGTGGT
TTTGTTGAAAACTGGTATTCACAATTATTATCACGGGCCGTATAGTAAAT
TCCCGTCATTTTAN
CTGTGGGAGGCCTGGCGGCCGCCTGTTTCAAAACTGAGGTGAACTATAGA
AGTTTCAACAAAAATTCAGTGCACTAGTTTCTGGGCAAGCTGCACTCGCA
ACAGTCTTATTGGACCAACTGTTGTGTTCTGTGCTCTGAAAGGCAACTCA
ATAATATACAGCTGAGTCATGGTATCTGTGTATCTATAGGTGGCCAAGAG
AAAGAGCTGGTTATGCGGCCCCTTCGCTCCCCTCTATTTGCAGTTTTTTA
GAGTCTTGTGGTCATTTTTGCCCTATGAAATGCTAGTAGGAAACTTGGAT
GATGTGACTCTTCAATCATTTCATACAACAGAAATGGAGATCAGTGAGAG
TTCTTCATTTCCACTGTGCCATCCATAGCTTAGAAGGCTGTGACAGTAGT
ACAGCTGCAATAGAACAACAATAGAATAACCAGTATGAAATAACCATGCT
AGAAACTAGGCATTCAATCAAATAAATTCCCTCATGTGTTTTTAATGTTT
CTTTTGAGATTTTATTAAAATTAAAAATTTCATGTAACTAAACTAAAATA
TACTACCAAAATTGTTGGTATACTGAAACAAGGAATTCTATCAGGAGAGA
CTACAAGCACAGCACTGAACACGCACCAGCTCCGACCACATAAATTGATA
TCTGCTTAGGGAAATTATATTTCGAGCTTCCATAACTTTTTAAGTATCTG
GTTCAGTCATCGTCTTTATATGAAATTCCGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_i06.b1 MSMg01no420_i06.b1 CHROMAT_FILE:
MSMg01no420_i06.b1 PHD_FILE: MSMg01no420_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:23 2005
         (177 letters)



>mm_chr3_61508621_61509197
          Length = 577

 Score =  321 bits (166), Expect = 1e-92
 Identities = 172/174 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacttctacaaatgtgccctggcatgtgtgtactgcacatgagtgtgtttgtgtacac 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ctgacttctacaaatgtgccctggcatgtgtgcactgcacatgagtgtgtttgtgtacac 260

                                                                       
Query: 61  acacttatgtaataaatacttttaaaaatggttttaaaatttactttgtatttagcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 acacttatgtaataaatacttttaaaaatggttttaaaatttactttgtatttagtttaa 320

                                                                 
Query: 121 attaagaaatatttcaaacataatattatgaaatatgctagactagtaacatgc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaagaaatatttcaaacataatattatgaaatatgctagactagtaacatgc 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no420_i06.g1 MSMg01no420_i06.g1 CHROMAT_FILE:
MSMg01no420_i06.g1 PHD_FILE: MSMg01no420_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:23 2005
         (301 letters)



>mm_chr3_61669680_61670380
          Length = 701

 Score =  565 bits (292), Expect = e-165
 Identities = 298/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   catacaacagaaatggagatcagtgagagttcttcatttccactgtgccatccatagctt 61
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 388 catacaacagaaatggagatcagtgagagttcttcatttccactgtaccatccatagctt 329

                                                                       
Query: 62  agaaggctgtgacagtagtacagctgcaatagaacaacaatagaataaccagtatgaaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agaaggctgtgacagtagtacagctgcaatagaacaacaatagaataaccagtatgaaat 269

                                                                       
Query: 122 aaccatgctagaaactaggcattcaatcaaataaattccctcatgtgtttttaatgtttc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaccatgctagaaactaggcattcaatcaaataaattccctcatgtgtttttaatgtttc 209

                                                                       
Query: 182 ttttgagattttattaaaattaaaaatttcatgtaactaaactaaaatatactaccaaaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttttgagattttattaaaattaaaaatttcatgtaactaaactaaaatatactaccaaaa 149

                                                                       
Query: 242 ttgttggtatactgaaacaaggaattctatcaggagagactacaagcacagcactgaaca 301
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 148 ttgttggtatactgaaacaaggaattctatcagcagagactacaagcacagcactgaaca 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)