BAC Information

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BAC

Clone NameMSMg01-420I14
Chromosome3 (Build37)
Map Location 80,359,476 - 80,360,065
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420I14.T7 (MSMg01no420_i14.b1)MSMg01-420I14.TJ (MSMg01no420_i14.g1)
ACCAG515379AG515380
length716748
length of high quality
(start - end)
58 (178 - 235)590 (64 - 653)
definitionCHROMAT_FILE: MSMg01no420_i14.b1 PHD_FILE: MSMg01no420_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:25 2005CHROMAT_FILE: MSMg01no420_i14.g1 PHD_FILE: MSMg01no420_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTTCAATATATTGCGGCGATATAAGAATATTACTACAAGAGGATCGG
AGGAAATCCTTTTGTTACCAGTCCAANATTCAGAAATCTCCTCTTGGCAG
ACTGAGGGGAAGCCTGGATAGTTATTTCTTACCCTGCTGGCTGACACAGA
AAAACAACAAAACACGGTCTATATGTTCTTCACATTTCCTTTCAAATCTA
ACCCATCTCTGGTTCATCACCACCCTCCCATTTGATATTGTGGACTAGTA
ATGCTTCCTTCATAGCCAATCCATCTTCCTTCATAACAAAGATAGACCCC
TTAAAGGCCCAGGTGGTTTTCTTTATTTCCTTCATTTGAACATTGGGGCG
ACTATATTCCTGGTTCCATATACCTGAATGGTGAAAGAAGAAGGCAAAGC
TCACCTGAATGTGGAACATCTAGGATGTGGATTGAAGAAAGGAAAAGTAT
GAATCATGAGGACAGGATGCTTATCAATGGAGGGAGAGAAGGTGGAATTC
ATTACCAGACATGATTTTGAGATAAAACAATTGTGTACTTATCAGTGAGG
TTATAAGTCTGTGAGTTCATTATTTGACCACACAAGACAAAATTATAGAT
GCACTCCTGACAGATGTAGTTAAAACACTATCAGTACGTGATAGCCTCCT
AATGACCATGAGTTAGACTCGAACCTTGCTGTTGATCATAACCACTATCT
CACTTACACTTATAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAAATATTTTGTAATTATCTGAGCTAACATAAAGTAT
CGAATGCCTAAGTCAGAGTCAGTGGAATCCATTTTTCTAACAGGGATGAA
GTAGAATTAATAATGCAAATATCAGCATTTATAGGGGGACAAGAAAAGTT
GTTAGACTTCTGATGTCATTGACATCATTTCGCATGTCCTCTGTCCTCAC
CGGAAGCTGATTGTGTATGAAGCTGAATCAGGGAGGATGTGATGCACACA
CCAGCAAAATCTATTTTGAAGATGTCATGATAGTAGGTGTCATGTGTCAA
CTTGACTGGAGTTTAAGGGCTAACTGATGAAGTTTACTCTGGGGGTTTTC
AAGAGGACATTTCTGATATGAAATTAACATGCCATGTGTTGAATATGTCT
TCAGTAATTTAAGTGGGTCTCATTCAATCAGTTGAAGCCCTGAAAACACA
GTGCTGATCATCCACAGGTGAGAGGAAAATCCTCCTGCCTCACTCCCTTT
GAGCTGGGATATTAATTTCTGCCTTAGGGTTTCCTCATTGTCTAGCTTGT
GACTGCAGATTATTGCCAATTCCTTGCAATAGTTGGGTCCACTCACTATA
TTCACTCTGTTTCTTCAGAGAAGCCAGCATAATACTTGTATAAACGATAT
TGTACTTAACTCAGATTTGCCATCTTTTCTATCCTATTTACCATACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_i14.g1 MSMg01no420_i14.g1 CHROMAT_FILE:
MSMg01no420_i14.g1 PHD_FILE: MSMg01no420_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:25 2005
         (590 letters)



>mm_chr3_80359276_80360265
          Length = 990

 Score = 1025 bits (530), Expect = 0.0
 Identities = 575/590 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatattttgtaattatctgagctaacataaagtatcgaatgcctaagtcagagtcagt 60
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 aaaatattttgtaactatctgagctaacataaagtatcggatgcctaagtcagagtcagt 260

                                                                       
Query: 61  ggaatccatttttctaacagggatgaagtagaattaataatgcaaatatcagcatttata 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaatccatttttctaacagagatgaagtagaattaataatgcaaatatcagcatttata 320

                                                                       
Query: 121 gggggacaagaaaagttgttagacttctgatgtcattgacatcatttcgcatgtcctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggggacaagaaaagttgttagacttctgatgtcattgacatcatttcgcatgtcctctg 380

                                                                       
Query: 181 tcctcaccggaagctgattgtgtatgaagctgaatcagggaggatgtgatgcacacacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctcaccggaagctgattgtgtatgaagctgaatcagggaggatgtgatgcacacacca 440

                                                                       
Query: 241 gcaaaatctattttgaagatgtcatgatagtaggtgtcatgtgtcaacttgactggagtt 300
            ||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 441 tcaaaaactatttcgaagatgtcatgatagtaggtgtcatgtatcaacttgactggagat 500

                                                                       
Query: 301 taagggctaactgatgaagtttactctgggggttttcaagaggacatttctgatatgaaa 360
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 501 taagggctaactgatgaagtttactctggaggttttcgagaggacatttctgatatgaaa 560

                                                                       
Query: 361 ttaacatgccatgtgttgaatatgtcttcagtaatttaagtgggtctcattcaatcagtt 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 ttaacatgccatgtgttgaatatgtcttcagtgatttaagtgggtctcattcaatcagtt 620

                                                                       
Query: 421 gaagccctgaaaacacagtgctgatcatccacaggtgagaggaaaatcctcctgcctcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 gaagccctgaaaacacagtgctgatcatccacaggtgagaggaaaatcctcctgcctcat 680

                                                                       
Query: 481 tccctttgagctgggatattaatttctgccttagggtttcctcattgtctagcttgtgac 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 tccctttgagttgggatattaatttctgccttagggtttcctcattgtctagcttatgac 740

                                                             
Query: 541 tgcagattattgccaattccttgcaatagttgggtccactcactatattc 590
           |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 741 tgcagattattgccaattccttacaatagttgggtccactcactatattc 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)