BAC Information

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BAC

Clone NameMSMg01-421A10
Chromosome3 (Build37)
Map Location 83,039,584 - 83,040,030
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421A10.T7 (MSMg01no421_a10.b1)MSMg01-421A10.TJ (MSMg01no421_a10.g1)
ACCAG515752AG515753
length762761
length of high quality
(start - end)
449 (78 - 526)567 (75 - 641)
definitionCHROMAT_FILE: MSMg01no421_a10.b1 PHD_FILE: MSMg01no421_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:02 2005CHROMAT_FILE: MSMg01no421_a10.g1 PHD_FILE: MSMg01no421_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCACGCGGA
ATCTTATCAGCCTCTCATAAAAATGGTGCAAAAAGATTCCTCCCTAAAGA
ACATGTTCTCCAACAACTTGAGAACATGGCCCTTGTGGAGTTTGGCTGAA
AAGTGTCTTGAAAGCAGAAACTTCCCGTAAGCCCAAACACTCATTCATAC
ATGCTACTGAAGGCTGACACGACTTTTATCATTCACTTCATCCTCGTCTT
CCAATCCAGCCAACTTGTTTGCGAAGACCACGTGGTTTTAGAGGATGCGT
CTGTTGTCTTTGGAGGTCTGTTGTTTTTTGAGATTGCTAGCAGCTGTGAG
AAATGGATCCATCTGCATGCTTCACTCCAAGAAAGCCCCTTTCTACGTGA
GAAGATCTCTTCCTCAACATGACTGGTCAGCCTCATAATGAATCACATTT
CTAGCCATTCACATTAGCAAAATATGGAAAGTGACATTCTTGTTGGTATT
AATGCTCTTTACCTGCTCATTTAAATGGGTGACTCTTTTTTTTTAGAAAA
AACCCAGAGTCCCTAACTAAGAGATGGGGGTTTCCGTGAAACCTTTAAAT
AACACCTCTAGGTGAAATGTAAAACTAAACAATTCACCTTATTTTTTTCC
TTTACCAACTAATTTTTTGTTTCCCTGGACCATAAAGCAAGGTTGATTGC
TTGCTATGATTGCTTTGCTTGTCTTTTAAAAACAAGATCTGATCTCTCTT
TCTTGGTTTCTN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCCGAATTCCACAGCACTCCACCCTCCAGACA
GCTTGTGCATTCCATTCACCCTCCTCTTCCAGGACGCTCCATGTGCTTTC
AAGGGTGTGATGCCAATATCCTGTTTAAGGCTAAGCACTAAAGAGTCATT
TATTTTCGACACTTTGGCTTGTTGTTTCTCCAGAAATAGCCACCCACTAG
AAAAGCAAGTTTCCGTAACCACAACTAAGAGCAGCACTAAACTGTGGACA
TAAGCATAAATATTTAGAAGACAATTTGACAGATACATCGTGCTCACTTG
GCGAAACAATAGCAGTGGCTTCCCCACTAGGGCTTATAACTTTCCCCAAA
CATGGACGTTTGGCCAGTTTTATGGTAACAGACATAACCTCCCTTCTGTG
AAGCAGGGCCTCGAATCAGTCGAGAATCAGCTAGTTATGCCAATAATAGT
CTGCCTATGATTGGCCCAGTGGGTAGGTTTTGCTTGGCCCCTCAATGTAT
TTTTGAAGTGCTTTGATTTATGACTTCCTTTGTTCCTTTACTATAAAAAC
TGCCTGAAACGTGCCACGTTTGAGCATGGGATTTGAGAAAACCTGCACCT
CTGTTCTGGGGATATGTTCAATCATTTTGGCTACGAACAAACTGTCTCGT
ACTGTCTTTGATGTAAGGGCTGGGCTCTTCAGTCCAGACTTTCTAGCTAA
TATTACCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_a10.b1 MSMg01no421_a10.b1 CHROMAT_FILE:
MSMg01no421_a10.b1 PHD_FILE: MSMg01no421_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:02 2005
         (449 letters)



>mm_chr3_83039384_83040230
          Length = 847

 Score =  785 bits (406), Expect = 0.0
 Identities = 438/450 (97%), Gaps = 4/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaaaagattcctccctaaagaacatgttctcc-aacaacttgagaacatggcccttgt 59
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 647 gcaaaaagattcctccctaaagaacatgtcctccaaacaacttgagaacatggcccttgt 588

                                                                       
Query: 60  ggagtttggctgaaaagtgtcttgaaagcagaaacttcccgtaagcccaaacactcattc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 587 ggagtttggctgaaaagtgtcttgaaagcagaaacttcccgtaagcccaaacattcattc 528

                                                                       
Query: 120 atacatgctactgaaggctgacacgacttttatcattcacttcatcctcgtcttccaatc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 527 atacatgctactgaaggctgacacgacttttatcattcacttcatcctcgtctttcaatc 468

                                                                       
Query: 180 cagccaacttgtttgcgaagaccacgtggttttagaggatgcgtctgttgtctttggagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cagccaacttgtttgcgaagaccacgtggttttagaggatgcgtctgttgtctttggagg 408

                                                                       
Query: 240 tctgttgttttttgagattgctagcagctgtgagaaatggatccatctgcatgcttcact 299
           ||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 407 tctggggttttttgagattgttagcagctgtgagaaatggatccatctgcatgcttcatt 348

                                                                       
Query: 300 ccaagaaagcccctttctacgtgagaagatctcttcctcaacatgactggtcagcctcat 359
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 347 ccaagaaagcccctttctacgtgaaaagatctcttcctcaacatgactggtcagcctcat 288

                                                                       
Query: 360 aatgaatcacatttctagccattcacattagcaaaatatggaaagtgacattcttgttgg 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 287 aatgaatcacatttctagccattcacattagcaaaatatggaaagtgacattc---ttgg 231

                                         
Query: 420 tattaatgctctttacctgctcatttaaat 449
           ||||||||||||||||||||||||||||||
Sbjct: 230 tattaatgctctttacctgctcatttaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 847
Length adjustment: 10
Effective length of query: 439
Effective length of database: 837
Effective search space:   367443
Effective search space used:   367443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)