CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGGAACTCTTCAGTAGCTAAGCTGTCATATTTNTGTGGAAAAGA
CAAACAAGCAAAATTAAATAACAAAGTAAAAATTCTGACTCAAGGCAGGA
CCAACAACTCTGAGATTGCCTTCTGATTGTCATACACATGTCTGGACATG
CACATACCTGAACTTACATACAAATAAGCATACACATACATATACACATA
TCATATACATGAAGATGCATATTCAAAGTCAGATAGAGAAGGATAGAGTG
AAAGAGAGAGGTATGAATGGAAGAAAAGTATAGAGGGAGGGAGACAGAGA
CAAAGAAGGAAGAGAAATATTCCATTTTGTTCAACTTGCAGTAAATAGAG
TTTTCATTTGCAAATTTTGTTGTGCAGGTTTATTTTCATAGGAAATGGGA
AGAAATAAACCCAATAGACCTGTATCATAGACTGACAATCATTTTTAAGT
AAATGTAAAATATGGAACAGAGGCTATGACTTTGAGCAGTTCAAATTTGA
TGTTCTTGTCTTGAAAAATGTATAAGAATTTTGATATATTGTAAATATCC
AATGCTTTTTCTCCTGAAAAAATAGAGGTCTATGTTGCAAAAGAAAAATA
TTGCAATGTTTAANAATTATACATTCCTGAATAGTCATGGNGCACCAGCC
CTTCTTTTGCACTCACCATCATGGGGGACATTGATATCACTCTACTGGGT
CTCTTTATTTATGCAAGTCN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATACAGTGAATGGAGCTTGGGAAGTCTTA
TGGAAGAATAGGAGAAAAAAATCACAGCCACTAAGGCAATAGAGAGTCTA
CAGAAAGACCTACAGAATTGCTACACCCACTCCAGTGGAGTCTGCATGAC
AAGTCCAAAAGCTTGGCTGCAGTCCTGAGGCACAAAGTTTCACAGAAACT
GGTCTCCTGGAGAGTCTCTGGCATTCTGTAACAGGGATGTAGTCCAGATT
TGTCCTTGAGATAGTGGAGGGGTTTTTTTTTGTGCTTTCTTTCAGTATTT
TACTGGATTAGAGCTAGAAATCTCAGGGCTAGTTCAACAAAGTAAACTTA
GAATTCTTATTATAGTCATGTATGGCAGAATACATTACATAACAGTAGAA
AGAAGGTGGTTTGTGGTTTAAGGAGGAACTAGAGTATTGTATTATTCATG
AAAAGGTTAGTAGAAAAAAACTCCTCTGGTGCATGTTTTTCACTAGGCCC
AGAGGAATAACGTAATTAGGTATTTACTAAGGGACCCTTGGGGGTGGGTT
ATACNCGACACTAGAATTGTACCTTGGTCTATAGCCCTTCCACCTGGCTC
TCGAGAGTATGCTGATCTTTTTTTGTCGTGGCTTTGTCCTTCGTTGCAAG
TTACTGCCGCGGTTTTGGCTTTTTTTTATGGTCGATTACTTTCCTTCTTT
TNNTTTGCAAGATAAAAAACAGA

Query= MSMg01no421_i07.b1 MSMg01no421_i07.b1 CHROMAT_FILE:
MSMg01no421_i07.b1 PHD_FILE: MSMg01no421_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:43 2005
         (645 letters)



>mm_chr3_71368933_71369977
          Length = 1045

 Score = 1087 bits (562), Expect = 0.0
 Identities = 622/643 (96%), Gaps = 3/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgggaactcttcagtagctaagctgtcatatttntgtggaaaagacaaacaag 64
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 204 gaattcttgggaactcttgagtagctaagctgtcatattt-tgtggaaaagacaaacaag 262

                                                                       
Query: 65  caaaattaaataacaaagtaaaaattctgactcaaggcaggaccaacaactctgagattg 124
           ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct: 263 caaaattaaataacaaagtaaaaattctgactcgaggcaggaccaacacctctgaggttg 322

                                                                       
Query: 125 ccttctgattgtcatacacatgtctggacatgcacatacctgaacttacatacaaataag 184
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 323 ccttctgattgtcatacacatgactgggcatgcacatacctgaacttacatacaaataag 382

                                                                       
Query: 185 catacacatacatatacacatatcatatacatgaagatgcatattcaaagtcagatagag 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 383 catacacatacatatacacatatcatatacatgaagatgcatagtcaaagtcagatagag 442

                                                                       
Query: 245 aaggatagagtgaaagagagaggtatgaatggaagaaaagtatagagggagggagacaga 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 443 aaggatagagtgaaagagagaggtatgaatggaagaaaagtagagagggagggagacaga 502

                                                                       
Query: 305 gacaaagaaggaagaga--aatattccattttgttcaacttgcagtaaatagagttttca 362
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gacaaagaaggaagagagaaatattccattttgttcaacttgcagtaaatagagttttca 562

                                                                       
Query: 363 tttgcaaattttgttgtgcaggtttattttcataggaaatgggaagaaataaacccaata 422
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 563 tttgcaaattttgttgtgcaggtttattttcataggaaatggaaagaaataaacccaata 622

                                                                       
Query: 423 gacctgtatcatagactgacaatcatttttaagtaaatgtaaaatatggaacagaggcta 482
           |||| |||||||||||||||||||||||| | |||||||||||| ||||||| |||||||
Sbjct: 623 gacccgtatcatagactgacaatcattttgatgtaaatgtaaaaaatggaacggaggcta 682

                                                                       
Query: 483 tgactttgagcagttcaaatttgatgttcttgtcttgaaaaatgtataagaattttgata 542
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgactttgagcagttcaagtttgatgttcttgtcttgaaaaatgtataagaattttgata 742

                                                                       
Query: 543 tattgtaaatatccaatgctttttctcctgaaaaaatagaggtctatgttgcaaaagaaa 602
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 743 tattgtaaatatctaatgctttttctcctgaaaaaagagaggtctatgttgcaaaagaaa 802

                                                      
Query: 603 aatattgcaatgtttaanaattatacattcctgaatagtcatg 645
           ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 803 aatattgcaatgtttaaaaattatacattcctgaatagtcatg 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)