BAC Information

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BAC

Clone NameMSMg01-421L04
Chromosome3 (Build37)
Map Location 80,072,539 - 80,072,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421L04.T7 (MSMg01no421_l04.b1)MSMg01-421L04.TJ (MSMg01no421_l04.g1)
ACCAG516263AG516264
length758790
length of high quality
(start - end)
421 (76 - 496)328 (74 - 401)
definitionCHROMAT_FILE: MSMg01no421_l04.b1 PHD_FILE: MSMg01no421_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:58 2005CHROMAT_FILE: MSMg01no421_l04.g1 PHD_FILE: MSMg01no421_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGATCC
GCGGAATTCACAGAGATCTTCTCGCCTCAGCCTCTAAAGTGCAGGGGTTA
AAGCTTGTTGGATGCCATGTAGAAGTCTAGGAGCCATGCTGCTGCTGGCT
GTAAAGTGCAAGTCTCCTTTGCATTTATGGCTGTATTTATGGCTGCAGAC
TCCGAGTTGAGAATCAGAGACTTAGAAGGTTCTGTAACAACTCCTCCTTT
GGGGGGAGGACAGTTTGCACAGGAAGCCATTGTGATAGGGCATACCATTG
TGATAGGGATGCTCGTCATATATATGAAGTGGAACTCTTTATAGGAGATG
GCTTCTGGTGGCGGATGGGAGTGGGGAAGGATTCAGTTTTCTTTAAGGGG
CTGGCCACTGGGAATTTGACCATGCTCCAATGAGTATATGGATAACACTA
TTTGGTCTTGGGATTTTTTTTCTTCTTCATTTGTAGGAAGGTCATAAGGA
TGGGGGATGGATCTGGCAAAACTGGAAAATGAATGTGATCATCTCGTTAA
CCTTCCCTCTTACTCCATATTCACTGTATCTTTCCCATTCATTCTCCTCT
TTTTTCTTTTTTTTCCATCATAATTGCTTTCATATCTACCTTATCTTACA
TCTTTATTCTTTTCCACGCCTCTCTCTTTTTTCTTTTTTCCTTCCATCTT
ACTCTATTCCATCTTCTCTCCTTCCACCCTTACTTCTCTTCATTCTTTTT
TTCCTTAT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACAAAATCAGTTTCTATCAGTCTCCTTTCTGTCTCATTCTGTT
GGCCAGATGTACAGAAGCAGCATCCACCTAAGTCCTATTCTCTGTGAAAA
CAGAACTTAGAGGCATTTGAAAGAACAAACAACAAACCCCAGGGCCTTAA
GGGATGGATGTGGATGGATGGCTCTCCTCACAGTGCGGCTGTGCCACCTC
TACCACATCACACTGTCAAAGAAATCAGGTAATAAAGCCCAATACCAGGG
ACCAGAAGGTGAATCTTCTCTACAGAGGAAACACCAATAAAATAACAAGG
AATTTCAAATAAATTTGTGGAGTGGTTAAAGGATTAAACTGTAAGGTCAA
TTAAATGGCCTGGGGAAGGGTACTTTTAACCTTTTTGGGAAACGGTATTT
TTAATCTTTTGGTTGGTCGGGGAAACTAGGACTTTAACAATTTCACACTT
TTGGGGTTTCCCTCCTCTCAATTTGTCATATGTAGAAACACCTTGGTTGG
TTATACCCTCTTCTTCTTTCCTTTCTAAAATTTTTCTTTCTGTTACAGGC
GTACGTGGTGCTTTTTGGTCTCTGTTGCCATACTTGACACTTTAATCTTC
TTTCTCCTGTTCTTTTTAATCTCTCACCTTCTTTTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_l04.g1 MSMg01no421_l04.g1 CHROMAT_FILE:
MSMg01no421_l04.g1 PHD_FILE: MSMg01no421_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:58 2005
         (328 letters)



>mm_chr3_80072253_80072975
          Length = 723

 Score =  571 bits (295), Expect = e-167
 Identities = 318/329 (96%), Gaps = 7/329 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatc 550

                                                                       
Query: 61  atcagggaaatgcaaatcaaaacaacaaaatcagtttctatcagtctcctttctgtctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atcagggaaatgcaaatcaaaacaacaaaatcagtttctatcagtctcctttctgtctca 490

                                                                       
Query: 121 ttctgttggccagatgtacagaagcagcatccacctaagtcctattctctgtgaaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttctgttggccagatgtacagaagcagcatccacctaagtcctattctctgtgaaaacag 430

                                                                       
Query: 181 aacttagaggcatttgaaagaacaaacaacaaaccccagggccttaa-gggatggatgtg 239
           ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||  
Sbjct: 429 aacttggaggcatttgaaagaacaaacaacaaaccccagagccttaaagggatggatg-- 372

                                                                       
Query: 240 gatggatggctctcctcacagtgcggctgtgccacctctaccacatcacactgtcaaaga 299
               |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 371 ----gatggctctcctcacagtgcggctgtgccacctctaccacatcacactgtcagaga 316

                                        
Query: 300 aatcaggtaataaagcccaataccaggga 328
           | |||||||||||||||||||||||||||
Sbjct: 315 agtcaggtaataaagcccaataccaggga 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 723
Length adjustment: 9
Effective length of query: 319
Effective length of database: 714
Effective search space:   227766
Effective search space used:   227766
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)