BAC Information

Click to search

BAC

Clone NameMSMg01-421L11
Chromosome3 (Build37)
Map Location 77,579,519 - 77,580,027
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421L11.T7 (MSMg01no421_l11.b1)MSMg01-421L11.TJ (MSMg01no421_l11.g1)
ACCAG516277AG516278
length782773
length of high quality
(start - end)		509 (68 - 576)480 (75 - 554)
definitionCHROMAT_FILE: MSMg01no421_l11.b1 PHD_FILE: MSMg01no421_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:59 2005CHROMAT_FILE: MSMg01no421_l11.g1 PHD_FILE: MSMg01no421_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCCACCTTTGCTCTCGTGGTGATCCCTAGGTCCTGTGGTGTAGA
GAGTACTCTAGAGCCCCTAGCAGCCTCCTCTGGGTTCAGGGGGAAGATGA
CAGGGGTGGCCCTGAGCAGAATGGATCCCCGTATAGTTTTTCTTAATATA
TAACATATAGAAACATCTGAGGTGTCTTTTAATGGAATAAGGAAAATCTG
AGCTACATAAAGAAAATGAAGTTATGTCATTTGCAGGAATTTGAATGCAA
CTAGAGATAACCATATAAAGTAAATTAAATTAGTCTCAGAACAAAAAATA
TTGTGTTTTCTCTTAATTGTGGGACATAGATTTCATGTAGCTACACAAAT
GTCTATATGTATAGATAGCATGAAAGTAGAAATGAAATTGTCTATAGCAA
TAAAGGAGGGTCATATAAGAAAGTGACAAGAAAGATTAAAGTAGTACAAG
TAGTACAATACATGAGATAAGCTTANAGGAAATTATAGATGGGATGCAAA
GTACATACAGATGATTTAATTATCAAAGTGTAATAAAATAAATTGAAAAT
TTATAAAGAACATTTCTCAAAAAGAATTGTCATTTGCTTTGAAATATTAA
GTGTAGAGGAACTACAATCTAGCAACTTGACTACTCTGGGCATATAATGA
GTACGGACATGGCTTTTATGCTAACACTCCGGAGGTAGTTCTGTTCTACC
AGTTTGGGCAGCCCCTTGGGAGCCACGGCCAA

GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGATATCATCTTCAACCTGCTAAA
TTTGAAGATTGCTTTGCTCCAACCCCCCCCCTTCAAACCAATGTTTCTTC
ATTTTGTAATGGGGATTTTTCTATGCTGTGAGAAATATGTAACTTTTGTT
CACAGTCATGATGATGCAGACTTAAGAGTTTACTTAGATTTCAGAGGTGA
TTCTGAGTATGAACTGGTAAACAACTGTTGGTACACAATGATTCTTGGAG
ATTTAGATAGTTCATTATTTATTGTGAAATGGATGCGAACCCATTGAGCT
GAATATGATTGCCATGGCTTGAATGTGAAATGTCTTCTACAAGTTTATTA
TTAATAACTTGGTTCCTAACTGGTGGCATTCTACTTAAAGGTCTTAGAAA
TGATAAGCATTGGAGCCTCCCAGTAGGAAGTTGATCACTAGATGTGTGTT
GTTTAGGTTGCCCCTCTCTATTCTCCCCTTTCTCCCATCTCTGTGCTCTC
TTTTATTTGTCCACCTACCAGTAAGCTGCCCTACTCCACAAAATGTGCCT
TTACAATGATCTCTGTCTTACTCCCGATACCATGGAATCATCCATTTGTG
CAGGGAAATCATTGCCCATTGAAAAACTTGGGTCTCTTTTTTCTCCCCGG
GAATTCCTCCCCAGACAGGAGAAGGTTAAAAATTTTTTTAGGGTGTAATC
TCTTTCTCCTCCTTTTCTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_l11.b1 MSMg01no421_l11.b1 CHROMAT_FILE:
MSMg01no421_l11.b1 PHD_FILE: MSMg01no421_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:59 2005
         (509 letters)



>mm_chr3_77579319_77580227
          Length = 909

 Score =  978 bits (506), Expect = 0.0
 Identities = 508/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcgtggtgatccctaggtcctgtggtgtagagagtactctagagcccctagcagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcgtggtgatccctaggtcctgtggtgtagagagtactctagagcccctagcagcctc 260

                                                                       
Query: 61  ctctgggttcagggggaagatgacaggggtggccctgagcagaatggatccccgtatagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgggttcagggggaagatgacaggggtggccctgagcagaatggatccccgtatagt 320

                                                                       
Query: 121 ttttcttaatatataacatatagaaacatctgaggtgtcttttaatggaataaggaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcttaatatataacatatagaaacatctgaggtgtcttttaatggaataaggaaaat 380

                                                                       
Query: 181 ctgagctacataaagaaaatgaagttatgtcatttgcaggaatttgaatgcaactagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagctacataaagaaaatgaagttatgtcatttgcaggaatttgaatgcaactagaga 440

                                                                       
Query: 241 taaccatataaagtaaattaaattagtctcagaacaaaaaatattgtgttttctcttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaccatataaagtaaattaaattagtctcagaacaaaaaatattgtgttttctcttaat 500

                                                                       
Query: 301 tgtgggacatagatttcatgtagctacacaaatgtctatatgtatagatagcatgaaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgggacatagatttcatgtagctacacaaatgtctatatgtatagatagcatgaaagt 560

                                                                       
Query: 361 agaaatgaaattgtctatagcaataaaggagggtcatataagaaagtgacaagaaagatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaatgaaattgtctatagcaataaaggagggtcatataagaaagtgacaagaaagatt 620

                                                                       
Query: 421 aaagtagtacaagtagtacaatacatgagataagcttanaggaaattatagatgggatgc 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 aaagtagtacaagtagtacaatacatgagataagcttaaaggaaattatagatgggatgc 680

                                        
Query: 481 aaagtacatacagatgatttaattatcaa 509
           |||||||||||||||||||||||||||||
Sbjct: 681 aaagtacatacagatgatttaattatcaa 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |