BAC Information

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BAC

Clone NameMSMg01-422G08
Chromosome3 (Build37)
Map Location 130,528,369 - 130,528,602
singlet/doubletsinglet
Overlap geneLOC546811
Upstream geneNola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34
Downstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422G08.T7 (MSMg01no422_g08.b1)MSMg01-422G08.TJ (MSMg01no422_g08.g1)
ACCAG516795AG516796
length733729
length of high quality
(start - end)
254 (59 - 312)249 (61 - 309)
definitionCHROMAT_FILE: MSMg01no422_g08.b1 PHD_FILE: MSMg01no422_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:50 2005CHROMAT_FILE: MSMg01no422_g08.g1 PHD_FILE: MSMg01no422_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAGCCGCGGAATTCATGTGT
ATTTACCTCTATACAAAGACGTGAAAGAAAGAGAAGAGGTCTCTGTACTT
GTGGAACTTAGACCAGCATAGATCAGTAAGTTAGAAAAATCTGTAGGCAC
ACAGGACCGCTGAGCCACACAGGACCGCTGAGCCCTTAAAACTAGCTAGA
CCAAGTGGAAATGAGCTATACATAGAAAGTAAATGCTGAATCCATACTAC
ATAAGATGAAAAAATAAACATCTAATGAATAATTTTACATTGATCAAATG
TCAAAAATAACTTTTTATCAGGGAGTGGCACTATTTTAAAAGATTATAAG
AATTAGGAGGGGTGACTTTGTTGGAGGAAGTATTCAGTGGAGGTAGGTTT
TAAGGTTTCAAAAGCCCAAGCCAAGCCCAATGTCATCTTCATCTTCTCTT
CTTCTCCTTCTCCTTCTCCTCCTCCTTCTCCTTCTTACTCTCTCTCTGTC
TCTCTCTGTCTCTGACTCTCACTCTGGCTGTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCACTCTGTCTGTCTCTCCCTCTCTCAC
TCTGTTCGACTCTGTCTCTCGCTCCCATCTCTTGTCGTGCCTTCTGAAGT
ATTTTTTCTTCTATTTTCTATACTACCGGCCGGTTTGCATCCCTGATTTT
TTGCACAGCTCTAATTGTATTTAAATATCCAAG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXACAGAAATTCTCACCTGAGGAATACCAAATGGCTGAGAAGCACCTGAA
AAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACAC
TGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGATTTTTTGATATAGTTCTACTGGAGGATCCCGAAATACCTCTC
CTGGGCATATATCCAGACGATGTCCCAACCGGTAAGAAGGACACATGCTC
CACTATGTTCATAGAAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGGGGAATGGATACAAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATGAAATTCCTA
GGCTAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACATAATC
ACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTACCCCT
TATACTTATTATACCCCAGATAATATATACAATTTGCTAAAATCCATGAA
ACTGATTAAGAATCAATAACATAGTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_g08.b1 MSMg01no422_g08.b1 CHROMAT_FILE:
MSMg01no422_g08.b1 PHD_FILE: MSMg01no422_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:50 2005
         (254 letters)



>mm_chr3_130528062_130528715
          Length = 654

 Score =  354 bits (183), Expect = e-102
 Identities = 227/253 (89%), Gaps = 19/253 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatacaaagacgtgaaagaaagagaagaggtctctgtacttgtggaacttagaccagca 60
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 541 ctatgcaaagacgtgaaagaaagagaagaggtctctgcacttgtggaacttagaccagca 482

                                                                       
Query: 61  tagatcagtaagttagaaaaatctgtaggcacacaggaccgctgagccacacaggaccgc 120
           |||| ||||||||||| ||||||||||||                  |||||||||||||
Sbjct: 481 tagaccagtaagttag-aaaatctgtagg------------------cacacaggaccgc 441

                                                                       
Query: 121 tgagcccttaaaactagctagaccaagtggaaatgagctatacatagaaagtaaatgctg 180
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgagcccttaaaactggctagaacaagtggaaatgagctatacatagaaagtaaatgctg 381

                                                                       
Query: 181 aatccatactacataagatgaaaaaataaacatctaatgaataattttacattgatcaaa 240
           |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 aatccatactacgtaagatgaaaaagtaaacatctaatgaataattttacattgatcaaa 321

                        
Query: 241 tgtcaaaaataac 253
           |||||||||||||
Sbjct: 320 tgtcaaaaataac 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)