BAC Information

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BAC

Clone NameMSMg01-422K06
Chromosome3 (Build37)
Map Location 52,002,210 - 52,002,441
singlet/doubletsinglet
Overlap geneLOC671890
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788
Downstream geneOlfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422K06.T7 (MSMg01no422_k06.b1)MSMg01-422K06.TJ (MSMg01no422_k06.g1)
ACCAG516982AG516983
length742761
length of high quality
(start - end)
232 (324 - 555)439 (68 - 506)
definitionCHROMAT_FILE: MSMg01no422_k06.b1 PHD_FILE: MSMg01no422_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:08 2005CHROMAT_FILE: MSMg01no422_k06.g1 PHD_FILE: MSMg01no422_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCCATATT
TAAATTTCGCCTGCAAATGAAAAAAAAAAGCAGCTTTTTACAACTCTAAA
TAAACTTTCTACTACTGAGAATGGTGATTGAAGCAAAAGTAAAAATAGCT
GCTCACACCACGATTTGAGGAAATCTAAATCTGAAACGATCGTGTTTTTT
TTTTTTTTCTTATTTGCATGCTACCAAATAAGGACATCGGGGAAGCAATG
AGTCACCAAGATTCTAGCATTTACCAGACTGCAACATGAGGGGAACGCAT
TCCCTAGGATGAGCTCTTTTTTTGGCTTTCCCCTCATCCCCGATGTGGAC
CCTTATACACCTACCTGAAAAAATCGGTCCTGATTTCTTTTCCTAATTCT
TATGGCAGTGTTTCAGTGAGTAATATTCATGCTTCAGACTGTCGAACCTG
TGGAAATAATGTCCCACATCTGAGGAACAGCTCAACCCTTTCACAGATTT
TTCCAACCTCTGTTATCTCGGTCGATCACACTCGATGTGCACGGAATCTC
CAAGGCAGAGCATGCGGTTGTCACCTAGGACATCACTGAACTGTGGATCT
TTTTTGCAGAGACGGGTGACTCACCATCCATAAGGTGGTGTATGCAGGAC
GACCCACTGTATTTTTACTTTCAAAGATCTGAATCCTCCTGTTTACGCGT
CCCATGGTCCTTGCATAAACCCATTGTTCTACTTGTCTTGTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGCCCAAATACTCAGCTCCTCCTGCACCATGCCAACCTGGACGCT
GCCATGCTCCCGCCTTGATAATAACGGACTGAACCTCTGAATCTGTAAGC
CAGCGTCTTAGTTTATTGCTGTGAACAGATACCATGACCAAAGTAACTCT
TTGGTCATGGTCAAAGGACAACATTTAATTGGTGGACTGGCAAGATGGCT
CACTGGGTAGAGGCACCCACTAGAGCCAACTGACTCCTGCACGTGGTCAT
CTGACCTTCAATATGTGTTTTTTTTTGTGCATGCACGCACACACCAAATA
AAATGTACAAACAAGGCAAAAAGCAATAGGAAGACAAATGTATGAACACC
CAAACATGTTTAAGTACATACATATGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAATATGTGTAGTAAAATCAGACTGTGGGGAAAGAAAACAC
TGGGATTGGTTGGTTTTGTTTTGCTTCGATTACCTCTTCCTCCAACTTCT
CATCTCTATCATTTTTTTCCTCTTTTTCATTCCTTATCTTCCCTTTTTCC
TCTCCTCCTTTCATACCTTATCTATTCTTTTCCGCCTCTTTTCATCGTTT
TCTCCTTCATAATTTATCATTCTTTTCTTCTTATTCTTCTCTCACCTCCT
CTTATATTTAATCTTTATGCTTATATTTACTATTTCTTTTACTTCATTAT
CTTCTTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_k06.b1 MSMg01no422_k06.b1 CHROMAT_FILE:
MSMg01no422_k06.b1 PHD_FILE: MSMg01no422_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:08 2005
         (232 letters)



>mm_chr3_52002010_52002641
          Length = 632

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctttcccctcatccccgatgtggacccttatacacctacctgaaaaaatcggtcctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggctttcccctcatccccgatgtggacccttatacacctacctgaaaaaatcggtcctga 373

                                                                       
Query: 61  tttcttttcctaattcttatggcagtgtttcagtgagtaatattcatgcttcagactgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tttcttttcctaattcttatggcagtgtttcagtgagtaatattcatgcttcagactgtc 313

                                                                       
Query: 121 gaacctgtggaaataatgtcccacatctgaggaacagctcaaccctttcacagatttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaacctgtggaaataatgtcccacatctgaggaacagctcaaccctttcacagatttttc 253

                                                               
Query: 181 caacctctgttatctcggtcgatcacactcgatgtgcacggaatctccaagg 232
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 252 caacctctgttatctcggtcgatcacactcgatgtgcgcggaatctccaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)