BAC Information

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BAC

Clone NameMSMg01-423J04
Chromosome3 (Build37)
Map Location 58,243,354 - 58,243,770
singlet/doubletsinglet
Overlap geneTsc22d2
Upstream geneTm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
Downstream geneD3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423J04.T7 (MSMg01no423_j04.b1)MSMg01-423J04.TJ (MSMg01no423_j04.g1)
ACCAG517697AG517698
length732715
length of high quality
(start - end)
473 (64 - 536)415 (73 - 487)
definitionCHROMAT_FILE: MSMg01no423_j04.b1 PHD_FILE: MSMg01no423_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:17 2005CHROMAT_FILE: MSMg01no423_j04.g1 PHD_FILE: MSMg01no423_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCT
TTGTTTTCACTGAGCCCCATTTTTTAATGGGTTTATTTGATTTTCTCGTG
TCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGATCCTTTTGTCT
TACTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAGGTCC
TATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAG
GAATTTTTCCCTTGTATTCATATCTTCAAGGGTTTCACCTACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGCTTTTATGTGGAGTTCCTTAATCCACTTA
GATTTGACCTTAGTACAAGGAGATAGGAATTGATCAATTCACATTCTTCT
ACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTT
TTTTCCACTGGGTGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCTCAG
GTGTGTGGGTTCATCTCTGTGTCTTCTATTACATTTCCTTGGTCTACTCG
TCTGTCGCTATACCAGTACCATGCCGCTTTTATCAGCAATGCTCTTTACC
TACAGTCTTTCGCCCGGCCTGGCGCTTCTCCCCCACGCCCCTTTTATTCC
TTGAGAAGATTCTTCGTTTTCCCTAGCCTTTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTACACTGTCAATCCTTGTTTAAGTTTT
GATTCCGTTTTTCCTACAAGCTAGTTGTATTTCTACTGCTGTTAGACATA
TCTCACTTAGTTTTTCTAAATCATAATTATATAAATCATCTATCAGTATC
CCTGATGGTTTATTTTGTTTTGTTTTGGGTTTTTTTGGAGTTTGGTTTGT
GGCAGGGTGCATGGAACTTGTGTAAACGGGGTAGCCTTGGATTCAAAAAG
GCTCCTTCTTTCTGTCTCCAAAATGCTATTATTAAAAGTATGTACCACCA
TTCCTATCAAATTTTCTTGTTTTGCAGAGAAGGAAATTGAAGCATGGAGA
GATTAAATAATGTATTATATAGCCATTAAATGGTGGCACTAGGAGTCACA
TTTAGTTTTCATTGGATATATATATATGCTCTCAGTATGCTGGCATGGAG
AGTAAACCTAGATAACATGGTGGATAAGCTTATATTATACCAAAACACAG
AATACATAATTTTAACTCTCATTGAACTAGAGCTTAATGTGTCATTCTCT
ATTAGAAAACCATCCTTTAACTCCAAATACAGGTCATGAATTGCATAGTG
TCCAAAACTAATTTTGGCCTACAAAACATTTGGTTCACGTTTACGGTTAT
GATGCCCCCCATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_j04.g1 MSMg01no423_j04.g1 CHROMAT_FILE:
MSMg01no423_j04.g1 PHD_FILE: MSMg01no423_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:17 2005
         (415 letters)



>mm_chr3_58243154_58243968
          Length = 815

 Score =  779 bits (403), Expect = 0.0
 Identities = 413/417 (99%), Gaps = 2/417 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacactgtcaatccttgtttaagttttgattccgtttttcctacaagctagttgtattt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttacactgtcaatccttgtttaagttttgattcagtttttcctacaagctagttgtattt 260

                                                                       
Query: 61  ctactgctgttagacatatctcacttagtttttctaaatcataattatataaatcatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctactgctgttagacatatctcacttagtttttctaaatcataattatataaatcatcta 320

                                                                       
Query: 121 tcagtatccctgatggtttattttgttttgttttgggtttttttggagtttggtttgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtatccctgatggtttattttgttttgttttgggtttttttggagtttggtttgtgg 380

                                                                       
Query: 181 cagggtgcatggaacttgtgtaaacggggtagccttggattcaaaaaggctccttctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggtgcatggaacttgtgtaaacggggtagccttggattcaaaaaggctccttctttc 440

                                                                       
Query: 241 tgtctccaaaatgctattattaaaagtatgtaccaccattcctatcaaattttcttgttt 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctccaaaatgctattattaaaagtatgtaccaccattcctatcaaattttcttgttt 500

                                                                       
Query: 301 tgcagagaaggaaattgaagcatggagagattaaataatgtattatatagccattaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcagagaaggaaattgaagcatggagagattaaataatgtattatatagccattaaatg 560

                                                                    
Query: 361 gtggcactaggagtcacatttagttttcattggatatatatatat--gctctcagta 415
           |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 561 gtggcactaggagtcacatttagttttcattggatatatatatatatgctctcagta 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)