BAC Information

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BAC

Clone NameMSMg01-424H22
Chromosome3 (Build37)
Map Location 143,854,696 - 143,854,990
singlet/doubletsinglet
Overlap geneLmo4
Upstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
Downstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424H22.T7 (MSMg01no424_h22.b1)MSMg01-424H22.TJ (MSMg01no424_h22.g1)
ACCAG518401AG518402
length745772
length of high quality
(start - end)		479 (51 - 529)295 (75 - 369)
definitionCHROMAT_FILE: MSMg01no424_h22.b1 PHD_FILE: MSMg01no424_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:28 2005CHROMAT_FILE: MSMg01no424_h22.g1 PHD_FILE: MSMg01no424_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATGATTGACCAAAGTAACAATTACAAGTTTTACAAAAAA
AAGTCAAACTTGGTAAAGCAATGAGTTTATAGGTGAAGGGTTACATACAT
GCTACATACAGGTTAGGAATGACTAAAAGTCAGTCCAAACACCAAAAAAG
TCCACCCCCAAAAGATTGATTAGTAAACAAATCTGGAACCCTGATGTTCT
CTGCATGACACACAGGCAGCATGTGGCTCAGAGTCTTTTCAGTAGCCCTG
GTTGCTCATATACTTTAGTCATGTAGTAAGTTTCAGGAATTTCCTGAGAC
CACTGAGTTCTTTGGTTCCTAAGTCTTAGCAACCTTAGAACTCTCTGAAT
CTTAAAGATGATCCTGAATGTTTCAATTCAGTGGAAAGTGCTACACAACC
CCAGGTAGAGCACTGCCATCAACGGTAACAGGAACTTCTAGTAACAGCTT
CTTGCAGTTTGTGGATCAGGAAGCAGAGAANAGGACCCAAAGACAGGTTG
GACCGCAACTCTAGAATGCCTGCCCCCTAATGGTTTATACTGACCAATCA
GTAACTGTGGCCTAAATATTCCATACCTCCTAGGACAGGCATCAGCTGGG
GAACAAGTGTTCCAGTATATGAGAATGTGGTGACATTCAAATCATAATTA
CCTTTAAAAAGAAAAGAGAATCCCCCCGCCCAAATTAGAAAAAAA

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACTGCCCCTCACACCCCCCCCCCAT
TCATATAAAAGCTTAACACATTCCCAAAGTGGGTCTTAACCTGCTATGCT
GCTGGGTTTATGCTATTTCCCTACTTAGTCTCTCTGTCTGTCTGTCTCTA
TCTCTGTCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTGTCTCTCTC
TCTCTCTCTCACACACACACACACACACACACACACACACACACACACAG
CTACAGCTTATTCTAGCCTGGGGAGATTAGAAGGATGGAGGGAGGAGATG
GTTGGTTGTTAGATTGTNNNNNNNNNNNNNNNNNNNNNNNNTTNNNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTT
NTTTTTTNNTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTNTNTNTTT
TTTTTTTTTTTTTTTTTTTTCTTTTTTTTCTTTTCTTTTTTTTCTTTTNN
TTTTNTTTTTTTTTTTTTTTNTCTTTTTTTTTTCTCTTTTTTCTCCCTTT
TTCCCTCTTTTTTTTTTTCCTCCTCCCCTTTTCCCCTTTCCTTCTCCTTC
TCCTCCTTTCTTCTCCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_h22.g1 MSMg01no424_h22.g1 CHROMAT_FILE:
MSMg01no424_h22.g1 PHD_FILE: MSMg01no424_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:28 2005
         (295 letters)



>mm_chr3_143854687_143855381
          Length = 695

 Score =  497 bits (257), Expect = e-145
 Identities = 285/299 (95%), Gaps = 10/299 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgcccctcacaccccccccccattcatataaaagcttaacacattcccaaagtgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cactgcccctcacaccccccccccattcatataaaagcttaacacattcccaaagtgggt 245

                                                                       
Query: 61  cttaacctgctatgctgctgggtttatgctatttccctacttagtctctctgtctgtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 244 cttaacctgctatgctgctgggtttatgctatttccctacttagtctc----tctgtctg 189

                                                                       
Query: 121 tctctatctctgtctctctgtctctgtctctctg----tctctgtctctctgtctctctc 176
           ||||||||||||||||||||||||| ||||||||    ||||||||||||| ||||||||
Sbjct: 188 tctctatctctgtctctctgtctctctctctctgtctctctctgtctctctctctctctc 129

                                                                       
Query: 177 tctctctct--cacacacacacacacacacacacacacacacacacacacagctacagct 234
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tctctctctcacacacacacacacacacacacacacacacacacacacacagctacagct 69

                                                                      
Query: 235 tattctagcctggggagattagaaggatggagggaggagatggttggttgttagattgt 293
           ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 68  tattctagcctggggagaacagaaggatggagggaggagatggttggttgttagattgt 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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