BAC Information

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BAC

Clone NameMSMg01-424O10
Chromosome3 (Build37)
Map Location 3,952,340 - 3,952,864
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167
Downstream geneLOC667709, LOC620283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424O10.T7 (MSMg01no424_o10.b1)MSMg01-424O10.TJ (MSMg01no424_o10.g1)
ACCAG518711AG518712
length765746
length of high quality
(start - end)
398 (66 - 463)520 (79 - 598)
definitionCHROMAT_FILE: MSMg01no424_o10.b1 PHD_FILE: MSMg01no424_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:58 2005CHROMAT_FILE: MSMg01no424_o10.g1 PHD_FILE: MSMg01no424_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTCTGTCCAGTCTGTTTGGAGTTCTGTAGGCTTCTTGTATGT
TCATGGGCATGTCATTCTTTAGGTTTGGGAAGTTTTCTTCTATAATTTTG
TTGAAAATATTTGCTGTCCCTTTAAGTGGAAAATCTTCATTCTCATCAAC
TCCTCTTATCCGTAGGTTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGA
TGTTTTGAGTTATGATCTTTTTGTGTTTTGTTCTTTGATTGTTTTGCCGA
TGTTCTCTATGGAATATTCTGCACCTGAGATTCTCTCTCTCATCTCTTGT
ATTCTGTTGCTGATGCTCGCATCTATGGTTCCAGATTTCTTTCCTACTGT
TTCTATCTCCAGTGTTGCCTCACTTTGGGTTTTCTTTAATGTGCCTACTT
CCCTTTTTAGGTCTCAGATGGTTTTATTCAATTCCATTATCTATTTGGCC
GTGTTTTTCTTGCCAATTTTTAAGGAATTTTTTGTGTTTTCTCTTTAAGA
TTTTCTATCTGATCTTAATTCGCTCTCACTTTTTCTTTTCTATGTGATAT
TATCTATATCCTTGATAGTTCGATTCGAGTGATTTCACTTTAGTCCTGCT
TGAAAAAAGACTCGTTTTAAATCTATTTAATTATTTTTTTGTTTGCTTCT
TAAATGTATTTTCTAATTATATATATACACTTATTTCAACTTACTACTCT
ATCCTTATATCTAAT
CCCGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAGTTCTGAACAAGATGG
AAGAAACATGTTGAGAAGACAGGAAGTGCAAGCAACATAAGCTAAGCAGA
AACATTCTATTGCACATTTATTTTGCAGCTTGATGAATGCCATTAATATT
AAAATGAGTTAGTAAGGTCTTCCCTGCTTCCTAGTGCAAAGTGACCTCAG
GTGGCTCAGCTGCAAATTGTCACTGTAAGAAATTAGAAGACAGAAATCAG
AGGACGGTCCCATTCTTTCTGTGCATATTTTGAAACATTTTAAATCTTTC
CTTAATGGAATGATGATTAAACCTTAAAGGTATTTCCATATATTTCAAAC
TATAACAAAATTCTTCTCATTGTTCATTAACATTGGTCTCTATTAAACAA
TATTTCATTTATGCTAGAAAAGTAAAAATTATTCATATGATATTAGAAAG
CTACCACTAGCATACATTTATTATAAAAATAATATTTTATATTTATTATA
TGATTATATGAAAAGAAACAAATATTTTGCAATCACCTTTAAATAGATTG
TATTTGTATTCAACACAAAATGGATAGATACACTCTAGACACCAAGTGCA
CAGTGTAGCATTGGTATTGTCTAAAATGTCATCTCATTGACACTCACTGA
GAATATAATGAGAATTGACTTGTGTGTACTGACTATTTCCCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_o10.g1 MSMg01no424_o10.g1 CHROMAT_FILE:
MSMg01no424_o10.g1 PHD_FILE: MSMg01no424_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:58 2005
         (520 letters)



>mm_chr3_3952223_3953147
          Length = 925

 Score =  953 bits (493), Expect = 0.0
 Identities = 515/525 (98%), Gaps = 5/525 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaagttctgaacaagatggaagaaacatgttgagaagacaggaagtgcaagcaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tctgaagttctgaacaagatggaagaaacatgttgagaagacaggaagtgcaagcaacat 583

                                                                       
Query: 61  aagctaagcagaaacattctattgcacatttattttgcagcttgatgaatgccattaata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 582 aagctaagcagaaacattctattgcacatttattttgcagcttgatgaatgctattaata 523

                                                                       
Query: 121 ttaaaatgagttagtaaggtcttccctgcttcctagtgcaaagtgacctcaggtggctca 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 522 ttaaaatgagttagtaaggtcttccctgtttcctagtgcaaagtgacctcaggtggctca 463

                                                                       
Query: 181 gctgcaaattgtcactgtaagaaattagaagacagaaatcagaggacggtcccattcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gctgcaaattgtcactgtaagaaattagaagacagaaatcagaggacggtcccattcttt 403

                                                                       
Query: 241 ctgtgcatattttgaaacattttaaatctttccttaatggaatgatgattaaaccttaaa 300
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 402 ctgtgcatattttgaaacattttaaatctatccttaatggaattatgattaaaccttaaa 343

                                                                       
Query: 301 ggtatttccatatatttcaaactataacaaaattcttctc-----attgttcattaacat 355
           |||||||||||||||||||| |||||||||||||||||||     |||||||||||||||
Sbjct: 342 ggtatttccatatatttcaagctataacaaaattcttctcctttcattgttcattaacat 283

                                                                       
Query: 356 tggtctctattaaacaatatttcatttatgctagaaaagtaaaaattattcatatgatat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tggtctctattaaacaatatttcatttatgctagaaaagtaaaaattattcatatgatat 223

                                                                       
Query: 416 tagaaagctaccactagcatacatttattataaaaataatattttatatttattatatga 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tagaaagctaccactagcatacatttattataaaaataatattttatatttattatatga 163

                                                        
Query: 476 ttatatgaaaagaaacaaatattttgcaatcacctttaaatagat 520
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ttatatgaaaagaaacaaatattttgcaatcacctttaaatagat 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 925
Length adjustment: 10
Effective length of query: 510
Effective length of database: 915
Effective search space:   466650
Effective search space used:   466650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)