XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCT
TATAGGTACTCCAATGTGTTTGTTAGAAAACAAAGGGGGCTGAAAATAAT
CTGTGCTCAACTAAAAATTAAAAGAAAATGAAGAACTAAGCCTAGATAAA
TTTTAATACTAAAAGCAAAATGTGAACATAACAGAACTGAATATGGAAGC
TCGGGCCTTAAGTCGTCAGCACTCAAGGAAGACAGAGACAAAACCAAGGA
AGAACTCTTAAAACAAACAAAGTTGTCAAATGAAGTGAGATACATCCCAA
TGAAGAAGAATCCAGATGCCTTCAACAGGCCAGCACTCTCAGAAATGAAA
GGTAATAGCAGGATTGAGAGCATTGAGCAGAAAGCTTAGAAGACAAGAAG
GAGTCCCTTAGAAACAGTAATAAAAGGATGAAAGCACATATTTTGAAAGG
TGAACATTACAAAAAAATACAGAAGGTTTAACATCTGAAGAGTAGTTCCC
CAAAATATGGGAGGAGAGACATTATTATAAAAATAACTAAAGACAATTCT
CCAGGAAAGATAATCCATCCTCAGATGGAGGAGCCAGTAGCACCCAAGAC
ACTGAGGGGCCCAGCTCCAGCACTGAGCTCAAGGTAAGTTCTGAGACTCC
TCTAAAGGCCCACAAACCACCCCCAACACCGGAGGATCATACTAAACACC
ATTGGAACCAGATCTGATTATATAAAAATAATGAGTTCTCCAGCCTTTAA
AA

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGGAGGATTGCTCTTTCTCTCTGGAAGATG
AGGGTAAACGCACCAGTTGAAAGTGAGCATGAGTTGAAGGAAGACCAGCA
GTCTCAACTAACCTGGACACCCAAGATCTCTCAGACATTGAGTCACCAAC
CAGACAACATACACTAGCTAATATGAGGCCCCCAACACATACAGCAAATG
ACTGCTTGGTCTGTCTTCAGTGAGAGAAGACGTACCAAACCCTTGAGAGA
CTTGTGACCCAGGGAATGGGGAGGTCTGGCAGGGTTGGAGAGTGTGTGGA
GGGGTAAGGACATCCTCTTGGAGATGGGAAGGAGGAATGGAATGAGAAAC
TGTCTGACGGCGCCACTGGTACTTGTATTATGATCGTGATGTTCATAAAG
ATCTCAGATACCCAACACGGCATGATTGATTACTTGCATGACTCGTATCC
CTTTTTTTTTCCACCTTTCTTTTTTTCCCTCTCCCTCCTTTTTATTTTAT
TTCCCTTTTCGTTTTTCTTAGTTTAATTCTTTTTTTTTTCCCTTTTTTTC
TCCCCCCACCTATTTTACATTTTTTCTTTTCTAGTCTTTCCTTCCTACTT
TTTTTTTCCTCTTTTCTATTCTCACTTCTTCCTTTCTCTCTTTCCTTCTA
TCATTTTTTCCTCCTTCTTTTACTCCTTTTCTTTCCCCCCGTCAACCATT
CTTTTTCTCTATTTTATTCACATCCTCCTTT

Query= MSMg01no425_b07.b1 MSMg01no425_b07.b1 CHROMAT_FILE:
MSMg01no425_b07.b1 PHD_FILE: MSMg01no425_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:12 2005
         (479 letters)



>mm_chr3_54759559_54760437
          Length = 879

 Score =  864 bits (447), Expect = 0.0
 Identities = 471/479 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtttgttagaaaacaaagggggctgaaaataatctgtgctcaactaaaaattaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtttgttagaaaacaaagggggctgaaaataatctgtgctcaactaaaaattaaaag 260

                                                                       
Query: 61  aaaatgaagaactaagcctagataaattttaatactaaaagcaaaatgtgaacataacag 120
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgaagaactaagtctagataaagtttaatactaaaagcaaaatgtgaacataacag 320

                                                                       
Query: 121 aactgaatatggaagctcgggccttaagtcgtcagcactcaaggaagacagagacaaaac 180
           |||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct: 321 aactgaatatggaagctcggacctttagtcgtcagcactcaaagaagacagagacaaaac 380

                                                                       
Query: 181 caaggaagaactcttaaaacaaacaaagttgtcaaatgaagtgagatacatcccaatgaa 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaggacgaactcttaaaacaaacaaagttgtcaaatgaagtgagatacatcccaatgaa 440

                                                                       
Query: 241 gaagaatccagatgccttcaacaggccagcactctcagaaatgaaaggtaatagcaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gaagaatccagatgccttcaacaggccagcactctcagaaatgaaaggtaatatcaggat 500

                                                                       
Query: 301 tgagagcattgagcagaaagcttagaagacaagaaggagtcccttagaaacagtaataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagagcattgagcagaaagcttagaagacaagaaggagtcccttagaaacagtaataaa 560

                                                                       
Query: 361 aggatgaaagcacatattttgaaaggtgaacattacaaaaaaatacagaaggtttaacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggatgaaagcacatattttgaaaggtgaacattacaaaaaaatacagaaggtttaacat 620

                                                                      
Query: 421 ctgaagagtagttccccaaaatatgggaggagagacattattataaaaataactaaaga 479
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaaaagtagttccccaaaatatgggaggagagacattattataaaaataactaaaga 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)